Factsheet for Solyc01g107740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066559	Potato	cytosol	94.96	96.17
VIT_03s0180g00030.t01	Wine grape	cytosol	72.69	70.04
Solyc10g050060.1.1	Tomato	cytosol	68.49	65.2
Os06t0638900-01	Rice	cytosol, plasma membrane	26.47	60.58
Bra034611.1-P	Field mustard	cytosol	55.88	55.19
CDX76264	Canola	cytosol	55.46	54.77
KRH77964	Soybean	cytosol	59.66	54.62
AT4G34150.1	Thale cress	cytosol	55.46	53.44
CDY57743	Canola	cytosol	53.36	53.14
KRH27566	Soybean	cytosol	57.56	53.1
CDX72452	Canola	cytosol	55.46	52.38
CDX75404	Canola	cytosol, extracellular, nucleus	56.72	52.33
Bra011500.1-P	Field mustard	cytosol	56.72	52.33
CDY49277	Canola	cytosol	57.14	51.71
Bra017628.1-P	Field mustard	cytosol	56.72	51.53
GSMUA_Achr4P09410_001	Banana	cytosol	52.1	50.82
GSMUA_Achr3P19730_001	Banana	mitochondrion	55.88	48.01
CDY31792	Canola	cytosol	12.61	46.15
OQU76760	Sorghum	cytosol	48.74	41.73
Zm00001d046625_P001	Maize	cytosol	51.26	41.22
TraesCS7B01G441800.1	Wheat	cytosol	46.64	40.81
TraesCS7B01G441900.1	Wheat	cytosol	46.64	40.81
TraesCSU01G173200.1	Wheat	cytosol	44.12	40.38
TraesCS7A01G524400.1	Wheat	cytosol	45.8	40.07
TraesCS7D01G513300.1	Wheat	cytosol	45.38	39.71
TraesCSU01G173100.1	Wheat	cytosol	45.8	38.65
HORVU7Hr1G116460.1	Barley	cytosol	43.7	37.28
HORVU7Hr1G116400.2	Barley	cytosol	43.7	37.28
CDY31791	Canola	extracellular, plasma membrane	10.08	29.63

Protein Annotations

EnsemblPlants:Solyc01g107740.2.1	EnsemblPlantsGene:Solyc01g107740.2	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	PFAM:PF00168	PFscan:PS50004	SEG:seg
SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0002767E6E	UniProt:K4B2Z0	MapMan:35.2	:

Description

No Description!

Coordinates

chr1:-:95184929..95188059

Molecular Weight (calculated)

26386.0 Da

IEP (calculated)

7.474

GRAVY (calculated)

-0.511

Length

238 amino acids

Sequence
(BLAST)

001: MSMISGIQGQ LLEITVVSCN KLKDTEWISR QDPYVCLEYG STKFRTRTCT DGGKNPTFQE KFVFTLIEGL QEINVVVWNS NTLTYDDFIG SGKIQLQKVL
101: SMGYDDTAWP IQTKTGRHAG EVRLIMFYAN ANKPATSYAP SYTAPQPHTP MYSAPSYAAP AAAYQTLSPY PAYPPHSAAY PPTPYPPPQT TAYTPVYPPP
201: SAYPPISYPP HSAYPPASYP PPTQDYSYSP GPYPPRPY

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.