Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72452 | Canola | cytosol | 85.02 | 83.33 |
| Bra011500.1-P | Field mustard | cytosol | 84.21 | 80.62 |
| CDY49277 | Canola | cytosol | 85.43 | 80.23 |
| Bra034611.1-P | Field mustard | cytosol | 77.73 | 79.67 |
| CDX76264 | Canola | cytosol | 77.33 | 79.25 |
| CDX75404 | Canola | cytosol, extracellular, nucleus | 82.59 | 79.07 |
| Bra017628.1-P | Field mustard | cytosol | 80.57 | 75.95 |
| CDY57743 | Canola | cytosol | 72.87 | 75.31 |
| Os06t0638900-01 | Rice | cytosol, plasma membrane | 25.1 | 59.62 |
| CDY31792 | Canola | cytosol | 15.38 | 58.46 |
| VIT_03s0180g00030.t01 | Wine grape | cytosol | 57.89 | 57.89 |
| PGSC0003DMT400066559 | Potato | cytosol | 54.25 | 57.02 |
| Solyc01g107740.2.1 | Tomato | cytosol | 53.44 | 55.46 |
| KRH77964 | Soybean | cytosol | 56.68 | 53.85 |
| PGSC0003DMT400015906 | Potato | cytosol | 53.44 | 52.8 |
| Solyc10g050060.1.1 | Tomato | cytosol | 52.63 | 52.0 |
| GSMUA_Achr4P09410_001 | Banana | cytosol | 50.61 | 51.23 |
| KRH27566 | Soybean | cytosol | 53.44 | 51.16 |
| TraesCS7B01G441800.1 | Wheat | cytosol | 48.18 | 43.75 |
| TraesCS7B01G441900.1 | Wheat | cytosol | 48.18 | 43.75 |
| TraesCSU01G173200.1 | Wheat | cytosol | 45.75 | 43.46 |
| TraesCS7A01G524400.1 | Wheat | cytosol | 47.77 | 43.38 |
| TraesCS7D01G513300.1 | Wheat | cytosol | 47.77 | 43.38 |
| PGSC0003DMT400077661 | Potato | cytosol | 35.63 | 43.14 |
| TraesCSU01G173100.1 | Wheat | cytosol | 48.18 | 42.2 |
| OQU76760 | Sorghum | cytosol | 47.37 | 42.09 |
| GSMUA_Achr3P19730_001 | Banana | mitochondrion | 46.56 | 41.52 |
| HORVU7Hr1G116460.1 | Barley | cytosol | 45.75 | 40.5 |
| HORVU7Hr1G116400.2 | Barley | cytosol | 45.75 | 40.5 |
| Zm00001d046625_P001 | Maize | cytosol | 47.77 | 39.86 |
| CDY31791 | Canola | extracellular, plasma membrane | 11.34 | 34.57 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:35.2 | EntrezGene:829563 | UniProt:A0A178V2Z8 | ProteinID:AEE86334.1 | EMBL:AF412098 |
| ArrayExpress:AT4G34150 | EnsemblPlantsGene:AT4G34150 | RefSeq:AT4G34150 | TAIR:AT4G34150 | RefSeq:AT4G34150-TAIR-G | EnsemblPlants:AT4G34150.1 |
| TAIR:AT4G34150.1 | EMBL:BT000766 | EMBL:BT014883 | InterPro:C2_dom | InterPro:C2_domain_sf | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0009409 | GO:GO:0009506 | GO:GO:0009628 | InterPro:IPR000008 | InterPro:IPR021934 | InterPro:IPR035892 |
| RefSeq:NP_567956.1 | ProteinID:OAP00081.1 | PFAM:PF00168 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50004 | PFscan:PS51516 | PANTHER:PTHR10024 | PANTHER:PTHR10024:SF345 | UniProt:Q945K9 |
| SMART:SM00239 | SUPFAM:SSF49562 | InterPro:Sox_C | UniParc:UPI00000AC2B7 | SEG:seg | : |
Description
AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
Coordinates
chr4:+:16354857..16357460
Molecular Weight (calculated)
27053.6 Da
IEP (calculated)
7.476
GRAVY (calculated)
-0.636
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.