Factsheet for PGSC0003DMT400066559

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107740.2.1	Tomato	cytosol	96.17	94.96
VIT_03s0180g00030.t01	Wine grape	cytosol	74.89	71.26
PGSC0003DMT400015906	Potato	cytosol	70.21	66.0
Os06t0638900-01	Rice	cytosol, plasma membrane	28.09	63.46
Bra034611.1-P	Field mustard	cytosol	57.87	56.43
CDX76264	Canola	cytosol	57.45	56.02
PGSC0003DMT400077661	Potato	cytosol	48.51	55.88
KRH77964	Soybean	cytosol	61.7	55.77
AT4G34150.1	Thale cress	cytosol	57.02	54.25
CDY57743	Canola	cytosol	54.89	53.97
KRH27566	Soybean	cytosol	59.15	53.88
CDX72452	Canola	cytosol	57.45	53.57
Bra011500.1-P	Field mustard	cytosol	58.3	53.1
CDX75404	Canola	cytosol, extracellular, nucleus	58.3	53.1
CDY49277	Canola	cytosol	59.15	52.85
Bra017628.1-P	Field mustard	cytosol	58.72	52.67
GSMUA_Achr4P09410_001	Banana	cytosol	54.04	52.05
GSMUA_Achr3P19730_001	Banana	mitochondrion	57.45	48.74
CDY31792	Canola	cytosol	12.77	46.15
OQU76760	Sorghum	cytosol	50.21	42.45
TraesCS7B01G441900.1	Wheat	cytosol	48.51	41.91
TraesCS7B01G441800.1	Wheat	cytosol	48.51	41.91
Zm00001d046625_P001	Maize	cytosol	52.77	41.89
TraesCSU01G173200.1	Wheat	cytosol	45.96	41.54
TraesCS7A01G524400.1	Wheat	cytosol	47.66	41.18
TraesCS7D01G513300.1	Wheat	cytosol	47.23	40.81
TraesCSU01G173100.1	Wheat	cytosol	47.66	39.72
HORVU7Hr1G116460.1	Barley	cytosol	45.53	38.35
HORVU7Hr1G116400.2	Barley	cytosol	45.53	38.35
CDY31791	Canola	extracellular, plasma membrane	10.21	29.63

Protein Annotations

EnsemblPlants:PGSC0003DMT400066559	EnsemblPlantsGene:PGSC0003DMG402025869	EntrezGene:102580844	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	PFAM:PF00168	PFscan:PS50004
PGSC:PGSC0003DMG402025869	RefSeq:XP_006346379.1	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI000295A2A6
UniProt:M1CFR6	MapMan:35.2	:	:	:	:

Description

C2 domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402025869]

Coordinates

chr1:-:84134534..84137749

Molecular Weight (calculated)

26170.8 Da

IEP (calculated)

7.427

GRAVY (calculated)

-0.554

Length

235 amino acids

Sequence
(BLAST)

001: MSMISGIQGQ LLEVTVVCCN KLKDTEWITR QDPYVCLEYG STKFRTRTCT DGGKNPTFQE KFVFTLIEGL REINVVVWNS NTLTYDDFIG SGKIQLQKVL
101: SMGYDDTAWP IQTKTGRHAG EVRLIMFYAN ANKPATSYAP SYTAPQPHTP MYSAPSYAAA YQTPSPYPAY PPHSAAYPPT PYPPPQTTAY PPVYPPPSAY
201: PPMSYPPHSA YPPASYPPPT QDYSYPPGPY PPQPY

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.