CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046625_P001	Maize	cytosol	88.13	82.77
Os06t0638900-01	Rice	cytosol, plasma membrane	30.58	81.73
TraesCS7D01G513300.1	Wheat	cytosol	58.99	60.29
TraesCS7A01G524400.1	Wheat	cytosol	58.63	59.93
TraesCS7B01G441800.1	Wheat	cytosol	58.27	59.56
TraesCS7B01G441900.1	Wheat	cytosol	58.27	59.56
TraesCSU01G173100.1	Wheat	cytosol	58.99	58.16
TraesCSU01G173200.1	Wheat	cytosol	54.32	58.08
HORVU7Hr1G116460.1	Barley	cytosol	54.68	54.48
HORVU7Hr1G116400.2	Barley	cytosol	54.68	54.48
PGSC0003DMT400066559	Potato	cytosol	42.45	50.21
VIT_03s0180g00030.t01	Wine grape	cytosol	43.88	49.39
CDX72452	Canola	cytosol	44.6	49.21
Bra034611.1-P	Field mustard	cytosol	42.45	48.96
Solyc01g107740.2.1	Tomato	cytosol	41.73	48.74
CDX76264	Canola	cytosol	42.09	48.55
Bra017628.1-P	Field mustard	cytosol	45.68	48.47
CDY49277	Canola	cytosol	45.32	47.91
PGSC0003DMT400015906	Potato	cytosol	42.81	47.6
AT4G34150.1	Thale cress	cytosol	42.09	47.37
CDY57743	Canola	cytosol	40.65	47.28
Solyc10g050060.1.1	Tomato	cytosol	42.45	47.2
KRH77964	Soybean	cytosol	43.88	46.92
KRH27566	Soybean	cytosol	42.81	46.12
Bra011500.1-P	Field mustard	cytosol	42.45	45.74
CDX75404	Canola	cytosol, extracellular, nucleus	42.09	45.35
GSMUA_Achr3P19730_001	Banana	mitochondrion	44.24	44.4
PGSC0003DMT400077661	Potato	cytosol	29.86	40.69
VIT_18s0001g09970.t01	Wine grape	cytosol	41.73	38.93
CDY31792	Canola	cytosol	8.63	36.92
CDY31791	Canola	extracellular, plasma membrane	6.12	20.99

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.2	EntrezGene:8067694	UniProt:A0A1W0VU19	InterPro:C2_dom	InterPro:C2_domain_sf
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006950
GO:GO:0008150	GO:GO:0009409	GO:GO:0009506	GO:GO:0009628	InterPro:IPR000008	InterPro:IPR035892
EnsemblPlants:OQU76760	ProteinID:OQU76760	ProteinID:OQU76760.1	PFAM:PF00168	PFscan:PS50004	PANTHER:PTHR10024
PANTHER:PTHR10024:SF345	SMART:SM00239	EnsemblPlantsGene:SORBI_3010G202500	SUPFAM:SSF49562	UniParc:UPI0001A89A82	RefSeq:XP_002438723.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:54529896..54532813

Molecular Weight (calculated)

30338.9 Da

IEP (calculated)

8.791

GRAVY (calculated)

-0.564

Length

278 amino acids

Sequence
(BLAST)

001: MSIHGLILEV RVTGCRKLRD TEFFTRQDPY VVLEYATTKL RTRTCTDGGR NPTFDEKFHI PLIEGLRELN VTVWNSNTLT HDDFIGNGRV YLHKVLTNGY
101: DDSSWSLQTR HMRSAGEVKL IMHVDVSAMK NKMGKSVAAS SAHPVPALSM RVPTPAPAPA PAPAPAPAPA PAPALASAIP YTGVTPSYPP VSPYPAATAY
201: PAYPTPSHAP YTTAEYPPPP QQPYQPPPAG YPPSYPPQPY EQSYPPQPYG QQPYPPPPAA QSPYPPAPYP GTYPPRPY

Best Arabidopsis Sequence Match ( AT3G55470.2 )
(BLAST)

001: MAVGILEVSL ISGKGLKRSD FLGKIDPYVE IQYKGQTRKS SVAKDGGRNP TWNDKLKWRA EFPGSGADYK LIVKVMDHDT FSSDDFIGEA TVHVKELLEM
101: GVEKGTAELR PTKYNIVDSD LSFVGELLIG VSYSLLQDRG MDGEQFGGWK HSQVD

Arabidopsis Description

At3g55470 [Source:UniProtKB/TrEMBL;Acc:Q9M2T2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.