Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES02145 | Sorghum | plastid | 85.56 | 84.85 |
| Zm00001d041957_P004 | Maize | plastid | 84.94 | 83.71 |
| TraesCS3D01G533000.1 | Wheat | plastid | 81.8 | 80.95 |
| TraesCS3B01G595600.1 | Wheat | plastid | 82.01 | 80.82 |
| TraesCS3A01G527600.1 | Wheat | plastid | 81.59 | 80.08 |
| GSMUA_Achr5P07090_001 | Banana | plastid | 72.59 | 76.43 |
| VIT_13s0019g01840.t01 | Wine grape | plastid | 71.34 | 72.4 |
| CDX70523 | Canola | plastid | 70.29 | 71.79 |
| CDX78541 | Canola | plastid | 70.08 | 71.58 |
| AT5G13840.1 | Thale cress | plastid | 71.34 | 70.89 |
| Bra006219.1-P | Field mustard | plastid | 70.71 | 69.55 |
| KRG97899 | Soybean | plastid | 70.5 | 68.92 |
| Solyc06g043150.2.1 | Tomato | nucleus, plastid | 71.13 | 68.14 |
| PGSC0003DMT400076326 | Potato | nucleus, plastid | 71.55 | 68.13 |
| KRH30985 | Soybean | plastid | 70.5 | 67.4 |
| HORVU3Hr1G115170.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 82.43 | 67.12 |
| Os03t0123300-01 | Rice | plastid | 59.62 | 54.49 |
| CDY04804 | Canola | mitochondrion, plastid | 14.44 | 43.12 |
| Os02t0700100-01 | Rice | extracellular | 39.33 | 40.09 |
| Os09t0242300-00 | Rice | plastid | 37.87 | 37.87 |
| Os04t0599800-01 | Rice | nucleus | 39.33 | 37.3 |
| Os01t0973000-01 | Rice | cytosol | 1.05 | 1.78 |
Protein Annotations
| MapMan:13.3.4.1.3 | Gene3D:2.130.10.10 | EntrezGene:4326397 | ProteinID:BAD87371.1 | ProteinID:BAD87415.1 | ProteinID:BAF07457.1 |
| ProteinID:BAS76439.1 | InterPro:Cdc20/Fizzy | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010997 | GO:GO:0019538 | GO:GO:0030234 |
| GO:GO:0097027 | GO:GO:1904668 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlantsGene:Os01g0972900 |
| EnsemblPlants:Os01t0972900-01 | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19918 |
| PANTHER:PTHR19918:SF31 | UniProt:Q5JM92 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI00004C2965 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_015632353.1 | SEG:seg |
Description
cell cycle switch 52 B, cell cycle switch 52B, B-type cell cycle switch 52Similar to Clone ZZD405 mRNA sequence. (Fragment). (Os01t0972900-01)
Coordinates
chr1:+:42949418..42952679
Molecular Weight (calculated)
52307.8 Da
IEP (calculated)
9.631
GRAVY (calculated)
-0.417
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MATDASPKPA PPRLNVPPAM AGGLRLDPAV ASPARLLLDV PKTPSPSKTT YSDRFIPCRS SSRLHNFALL DRDRASPSST TDDAPYSRLL RAEIFGPDSP
101: SPAPSSPNTN LFRFKTDHPS PKSPFAASAA ATAGHYDCTA GSAESSTPRK PPRKVPKTPH KVLDAPSLQD DFYLNLVDWS SQNTLAVGLG NCVYLWSASN
201: CKVTKLCDLG PRDSVCAVHW TREGSYLAIG TSLGDVQIWD SSRCKRIRNM GGHQTRTGVL AWSSRILSSG SRDKNILQHD IRVPSDYISK FSGHRSEVCG
301: LKWSHDDREL ASGGNDNQLL VWNQRSQQPI LRLTEHTAAV KAIAWSPHQQ GLLASGGGTA DRCIRFWNTV NGNMLNSVDT GSQVCNLAWC KNVNELVSTH
401: GYSQNQIMVW KYPSMSKVAT LTGHTLRVLY LAMSPDGQTI VTGAGDETLR FWNIFPSMKT QAPVRDIGLW SFSRSHIR
101: SPAPSSPNTN LFRFKTDHPS PKSPFAASAA ATAGHYDCTA GSAESSTPRK PPRKVPKTPH KVLDAPSLQD DFYLNLVDWS SQNTLAVGLG NCVYLWSASN
201: CKVTKLCDLG PRDSVCAVHW TREGSYLAIG TSLGDVQIWD SSRCKRIRNM GGHQTRTGVL AWSSRILSSG SRDKNILQHD IRVPSDYISK FSGHRSEVCG
301: LKWSHDDREL ASGGNDNQLL VWNQRSQQPI LRLTEHTAAV KAIAWSPHQQ GLLASGGGTA DRCIRFWNTV NGNMLNSVDT GSQVCNLAWC KNVNELVSTH
401: GYSQNQIMVW KYPSMSKVAT LTGHTLRVLY LAMSPDGQTI VTGAGDETLR FWNIFPSMKT QAPVRDIGLW SFSRSHIR
001: MASPQSTKTG LNLPAGMNQT SLRLETFSSS FRGISSLSSP SKSTCSDRFI PCRSSSRLHA FDLQDKEPTT PVKEGGNEAY SRLLKSELFG SDFASPLLSP
101: AGGQGSASSP MSPCTNMLRF KTDRSNSSPS SPFSPSILGN DNGHSSDSSP PPKPPRKVPK TPHKVLDAPS LQDDFYLNVV DWSSQNVLAV GLGTCVYLWT
201: ASNSKVTKLC DLGPNDSVCS VQWTREGSYI SIGTSHGQVQ VWDGTQCKRV RTMGGHQTRT GVLAWNSRIL SSGSRDRNIL QHDIRVQSDF VSKLVGHKSE
301: VCGLKWSHDD RELASGGNDN QLLVWNNHSQ QPILKLTEHT AAVKAITWSP HQSSLLASGG GTADRCIRFW NTTNGNQLNS IDTGSQVCNL AWSKNVNEIV
401: STHGYSQNQI MLWKYPSMSK VATLTGHSMR VLYLATSPDG QTIVTGAGDE TLRFWNVFPS VKMQTPVKDT GLWSLGRTQI R
101: AGGQGSASSP MSPCTNMLRF KTDRSNSSPS SPFSPSILGN DNGHSSDSSP PPKPPRKVPK TPHKVLDAPS LQDDFYLNVV DWSSQNVLAV GLGTCVYLWT
201: ASNSKVTKLC DLGPNDSVCS VQWTREGSYI SIGTSHGQVQ VWDGTQCKRV RTMGGHQTRT GVLAWNSRIL SSGSRDRNIL QHDIRVQSDF VSKLVGHKSE
301: VCGLKWSHDD RELASGGNDN QLLVWNNHSQ QPILKLTEHT AAVKAITWSP HQSSLLASGG GTADRCIRFW NTTNGNQLNS IDTGSQVCNL AWSKNVNEIV
401: STHGYSQNQI MLWKYPSMSK VATLTGHSMR VLYLATSPDG QTIVTGAGDE TLRFWNVFPS VKMQTPVKDT GLWSLGRTQI R
Arabidopsis Description
FZR3Protein FIZZY-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPL5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.