Factsheet for Os01t0611000-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 19038476
nucleus: 26035336
plastid: 27992503

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87155	Sorghum	golgi	89.54	89.07
Zm00001d044455_P001	Maize	plasma membrane	87.4	85.56
TraesCS7D01G442500.1	Wheat	golgi	84.72	85.41
TraesCS7A01G453100.1	Wheat	golgi	84.72	85.41
TraesCS7B01G353600.2	Wheat	extracellular	84.45	85.14
GSMUA_Achr1P14570_001	Banana	extracellular	68.36	69.29
GSMUA_Achr2P08300_001	Banana	extracellular	68.36	69.11
VIT_04s0008g05010.t01	Wine grape	extracellular, golgi	67.83	68.75
Bra023324.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	61.93	67.94
Os04t0494950-01	Rice	extracellular, vacuole	67.29	67.47
Os04t0494900-01	Rice	extracellular	66.49	65.78
CDY54909	Canola	cytoskeleton, cytosol, peroxisome	59.25	65.19
AT5G11420.1	Thale cress	extracellular, golgi, vacuole	63.81	65.03
Os04t0494600-01	Rice	extracellular	65.68	64.99
CDX85713	Canola	extracellular	63.54	64.75
PGSC0003DMT400074806	Potato	extracellular	64.34	64.69
CDX91217	Canola	extracellular	63.27	64.48
Solyc08g067030.2.1	Tomato	extracellular	64.08	64.42
AT4G32460.1	Thale cress	endoplasmic reticulum, golgi	63.0	64.38
Bra009841.1-P	Field mustard	extracellular	63.27	64.31
CDX80511	Canola	extracellular	63.27	64.31
CDX88180	Canola	extracellular	63.27	64.31
Bra011349.1-P	Field mustard	golgi	62.73	64.11
CDX75247	Canola	golgi	62.73	64.11
Os02t0205200-01	Rice	mitochondrion, nucleus, plastid	62.73	64.11
CDX97108	Canola	golgi	62.73	63.93
CDX68849	Canola	golgi	62.47	63.84
CDY19801	Canola	extracellular	63.27	63.78
AT5G25460.1	Thale cress	endoplasmic reticulum, extracellular	63.0	63.69
KRH05109	Soybean	nucleus	62.47	63.66
KRH16010	Soybean	nucleus	62.47	63.66
Bra020500.1-P	Field mustard	extracellular	61.66	62.84
CDY05493	Canola	extracellular	61.66	62.84
Os04t0495000-00	Rice	extracellular, golgi, vacuole	62.2	62.2
Solyc03g120040.2.1	Tomato	extracellular, nucleus	42.36	61.24
KRH52489	Soybean	extracellular, golgi	60.59	61.08
Os02t0527500-00	Rice	plastid	21.45	61.07
Solyc06g067910.2.1	Tomato	nucleus	59.79	59.95
PGSC0003DMT400014547	Potato	extracellular	58.98	59.78
KRH52488	Soybean	extracellular	58.45	59.73
PGSC0003DMT400073388	Potato	mitochondrion	58.98	59.3
VIT_09s0002g05930.t01	Wine grape	endoplasmic reticulum, extracellular	64.34	59.26
KRH23537	Soybean	nucleus	59.25	59.09
KRH09784	Soybean	nucleus	59.25	59.09
PGSC0003DMT400073682	Potato	cytosol	50.67	56.42
Solyc12g042930.1.1	Tomato	endoplasmic reticulum, golgi	56.3	55.26
KRH44408	Soybean	golgi	57.37	48.97
CDX80516	Canola	plastid	39.68	48.37
Os03t0807700-01	Rice	plastid	46.11	43.77
Os01t0756600-01	Rice	plasma membrane	46.38	43.36
Os07t0206900-01	Rice	cytosol, peroxisome	10.99	41.84
Os01t0531400-00	Rice	cytosol	30.83	41.67
Os03t0328501-00	Rice	plastid	31.37	37.62
Os04t0494800-01	Rice	extracellular	24.4	24.01
Os07t0132600-00	Rice	mitochondrion, nucleus, plastid	21.18	21.64

Protein Annotations

EMBL:AK060682	EMBL:AK072500	EnsemblPlants:Os01t0611000-01	EnsemblPlantsGene:Os01g0611000	EntrezGene:4325311	Gene3D:2.60.120.260
InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979	PANTHER:PTHR31265	PANTHER:PTHR31265:SF12	PFAM:PF04862
ProteinID:BAB21293.1	ProteinID:BAB93263.1	ProteinID:BAS73117.1	ProteinID:EAZ12659.1	RefSeq:XP_015622421.1	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF49785	UniParc:UPI00000ABDD2	UniProt:Q9AX68	MapMan:35.2	:

Description

Protein of unknown function DUF642 domain containing protein. (Os01t0611000-01);Hypothetical conserved gene. (Os01t0611000-02)

Coordinates

chr1:+:24181111..24183979

Molecular Weight (calculated)

39853.9 Da

IEP (calculated)

7.888

GRAVY (calculated)

0.038

Length

373 amino acids

Sequence
(BLAST)

001: MRRVTVLVLL LACAAARAAA AVVTDGLLPN GNFEEGPPKS DLVNGTVVRG ANAIPRWETS GFVEYIESGH KQGDMLLVVP QGAHAVRLGN EASIRQRLAV
101: TRGAYYAVTF SAARTCAQAE QLNVSVSPEW GVLPMQTIYG SNGWDSYAWA FKAKMDEVAL VIHNPGVEED PACGPLIDGV AIRALYPPTL AKGNMLKNGG
201: FEEGPYFLPN ASWGVLVPPN IEDDHSPLPA WMIMSSKAVK YVDAAHFAVP QGARAVELVG GKESALVQEV RTVPGWTYRL SFAVGDARDG CAGSMVAEAY
301: AARASIKVPY ESKGTGGYKR AVLEFAAIAN RTRVVFQSTF YHTMTDGSLC GPVIDDASLV GLRKKTAGRR LLL

Best Arabidopsis Sequence Match ( AT4G32460.1 )
(BLAST)

001: MKEMGVIVLL LLHSFFYVAF CFNDGLLPNG DFELGPRHSD MKGTQVINIT AIPNWELSGF VEYIPSGHKQ GDMILVVPKG AFAVRLGNEA SIKQKISVKK
101: GSYYSITFSA ARTCAQDERL NVSVAPHHAV MPIQTVYSSS GWDLYSWAFK AQSDYADIVI HNPGVEEDPA CGPLIDGVAM RALFPPRPTN KNILKNGGFE
201: EGPWVLPNIS SGVLIPPNSI DDHSPLPGWM VESLKAVKYI DSDHFSVPQG RRAVELVAGK ESAVAQVVRT IPGKTYVLSF SVGDASNACA GSMIVEAFAG
301: KDTIKVPYES KGKGGFKRSS LRFVAVSSRT RVMFYSTFYA MRNDDFSSLC GPVIDDVKLL SARRP

Arabidopsis Description

At4g32460 [Source:UniProtKB/TrEMBL;Acc:Q8LAR0]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.