Factsheet for Solyc03g120040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014547	Potato	extracellular	94.19	66.03
Solyc06g067910.2.1	Tomato	nucleus	81.78	56.72
Solyc12g042930.1.1	Tomato	endoplasmic reticulum, golgi	79.84	54.21
Os02t0527500-00	Rice	plastid	24.42	48.09
VIT_09s0002g05930.t01	Wine grape	endoplasmic reticulum, extracellular	71.71	45.68
GSMUA_Achr7P08400_001	Banana	endoplasmic reticulum, extracellular, vacuole	64.34	45.23
KRH09784	Soybean	nucleus	64.73	44.65
KRH23537	Soybean	nucleus	64.73	44.65
GSMUA_Achr1P14570_001	Banana	extracellular	62.79	44.02
Solyc08g067030.2.1	Tomato	extracellular	62.79	43.67
GSMUA_Achr2P08300_001	Banana	extracellular	62.4	43.63
GSMUA_Achr2P17020_001	Banana	endoplasmic reticulum, vacuole	61.24	43.05
TraesCS7A01G453100.1	Wheat	golgi	61.63	42.97
TraesCS7D01G442500.1	Wheat	golgi	61.63	42.97
TraesCS7B01G353600.2	Wheat	extracellular	61.24	42.7
Os01t0611000-01	Rice	extracellular	61.24	42.36
OQU87155	Sorghum	golgi	61.24	42.13
HORVU6Hr1G037000.1	Barley	extracellular	59.3	40.91
TraesCS6A01G177500.1	Wheat	extracellular	58.91	40.64
KXG29757	Sorghum	golgi	58.53	40.59
Zm00001d044455_P001	Maize	plasma membrane	59.69	40.42
TraesCS6B01G207200.1	Wheat	extracellular	58.53	40.37
TraesCS2B01G369800.1	Wheat	extracellular	58.14	40.0
TraesCS2A01G351600.1	Wheat	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	57.75	39.52
TraesCS2D01G349800.1	Wheat	mitochondrion	57.36	39.26
Os04t0494950-01	Rice	extracellular, vacuole	56.59	39.25
HORVU2Hr1G085440.1	Barley	extracellular	57.36	39.15
TraesCS2D01G432500.1	Wheat	extracellular, golgi	56.59	39.14
TraesCS2A01G434700.1	Wheat	golgi	56.59	39.14
Zm00001d003186_P001	Maize	extracellular	57.36	39.05
EES11052	Sorghum	mitochondrion	57.36	39.05
TraesCS2B01G369900.1	Wheat	extracellular	55.04	38.9
TraesCS2A01G351700.1	Wheat	extracellular	55.04	38.9
TraesCS2B01G455800.1	Wheat	golgi	56.2	38.87
Os04t0494900-01	Rice	extracellular	56.59	38.73
TraesCS2D01G349900.1	Wheat	extracellular	54.65	38.63
Os04t0494600-01	Rice	extracellular	56.2	38.46
EES11054	Sorghum	extracellular, vacuole	56.2	38.36
Os02t0205200-01	Rice	mitochondrion, nucleus, plastid	54.26	38.36
TraesCS6D01G166800.1	Wheat	extracellular, golgi, vacuole	50.39	38.24
KXG26630	Sorghum	extracellular	55.81	37.89
KRH44408	Soybean	golgi	63.95	37.76
EES11053	Sorghum	endoplasmic reticulum, extracellular, vacuole	54.65	37.4
Zm00001d003183_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	55.04	37.37
OQU81862	Sorghum	cytosol, endoplasmic reticulum, golgi, mitochondrion	56.59	37.24
TraesCS2D01G349700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	54.26	36.94
TraesCS2A01G351500.1	Wheat	extracellular, golgi	53.49	36.41
TraesCS2B01G369700.1	Wheat	endoplasmic reticulum, golgi	53.49	36.41
Solyc01g087540.2.1	Tomato	extracellular	51.55	36.24
TraesCS5A01G385400.1	Wheat	extracellular	52.71	36.07
HORVU2Hr1G085430.1	Barley	endoplasmic reticulum, golgi	52.71	35.98
TraesCS5D01G395400.1	Wheat	extracellular	52.71	35.98
Os04t0495000-00	Rice	extracellular, golgi, vacuole	51.55	35.66
TraesCS2D01G349500.1	Wheat	extracellular	51.94	35.54
TraesCS2A01G351400.1	Wheat	extracellular	51.55	35.28
HORVU5Hr1G094750.2	Barley	extracellular	52.33	34.97
TraesCS2B01G369500.1	Wheat	cytosol	48.06	34.64
TraesCS2A01G351200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	50.39	34.3
Zm00001d003184_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, peroxisome	47.67	34.26
Zm00001d003187_P002	Maize	endoplasmic reticulum, plasma membrane	52.71	34.26
TraesCS2D01G349200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	50.0	34.04
TraesCS2B01G369300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	50.0	34.04
HORVU2Hr1G085370.2	Barley	endoplasmic reticulum	50.0	33.95
TraesCS2A01G421300.1	Wheat	extracellular	49.22	32.99
TraesCS2B01G440300.1	Wheat	extracellular	48.84	32.81
TraesCS5B01G390400.1	Wheat	plastid	38.76	32.57
KXG26629	Sorghum	golgi	51.55	32.13
Zm00001d025754_P001	Maize	golgi	50.78	32.11
Solyc02g070540.2.1	Tomato	endoplasmic reticulum, vacuole	47.67	31.46
Solyc04g015620.2.1	Tomato	plastid	44.57	31.08
Solyc04g015610.2.1	Tomato	extracellular	44.19	30.89
HORVU2Hr1G085520.2	Barley	extracellular	37.6	26.58
HORVU2Hr1G085340.2	Barley	mitochondrion, plastid	51.16	26.4
Zm00001d015715_P001	Maize	plasma membrane	58.14	25.6
Os03t0328501-00	Rice	plastid	30.62	25.4
Zm00001d003185_P001	Maize	extracellular	56.98	21.24
Os07t0132600-00	Rice	mitochondrion, nucleus, plastid	11.63	8.22
Os04t0494800-01	Rice	extracellular	5.43	3.69

Protein Annotations

EnsemblPlants:Solyc03g120040.2.1	EnsemblPlantsGene:Solyc03g120040.2	InterPro:DUF642	PANTHER:PTHR31265	PANTHER:PTHR31265:SF9	PFAM:PF04862
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00027669A5	UniProt:K4BMF3	MapMan:35.2	:

Description

No Description!

Coordinates

chr3:+:68546105..68549034

Molecular Weight (calculated)

28569.0 Da

IEP (calculated)

5.111

GRAVY (calculated)

-0.302

Length

258 amino acids

Sequence
(BLAST)

001: MKKMGILNIV LLFATINVAL SVQDGLLPNG NFEQGPKASQ MKGTKVTDPH AIPHWEISGY VEYIRSGQTQ GDMLLPVPEG AFAVRLGEDA SIKTRVTNVT
101: SGSFYSLSFN FARTCAQEEK LNVSVSPNTE PNDWGMLPMQ TMYSSDGWDS YSWGFLAQAN EIEITLHNPA VEKDPACGPL IDFIALKALK NPHRQRGNML
201: KNGNFEEGPY IFPNTSWGVL IPPNIEDDHS PLPGWMIESL KAVKYIDAEH FTVPEGKR

Best Arabidopsis Sequence Match ( AT1G80240.1 )
(BLAST)

001: MMYQEAALLL ALLFISSNVV LSAPVRDGLL PNGNFELGPK PSQMKGSVVK ERTAVPNWNI IGFVEFIKSG QKQDDMVLVV PQGSSAVRLG NEASISQKIS
101: VLPGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPEIE IRFHNPGVEE HPACGPLIDA VAIKALFPPR FSGYNLIKNG
201: NFEEGPYVFP TAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFAV PEGHRAIELV GGKESAISQI VRTSLNKFYA LTFNVGDARD GCEGPMIVEA
301: FAGQGKVMVD YASKGKGGFR RGRLVFKAVS ARTRVTFLST FYHMKSDHSG SLCGPVIDDV RLVAVGKLRG

Arabidopsis Description

At1g80240 [Source:UniProtKB/TrEMBL;Acc:Q9SSB7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.