Factsheet for Solyc04g015610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

extracellular: 22892874
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g015620.2.1	Tomato	plastid	85.09	84.86
VIT_08s0007g08460.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	64.23	64.58
CDX79913	Canola	cytosol	35.5	61.5
AT2G41810.1	Thale cress	extracellular, vacuole	61.25	61.08
Bra004651.1-P	Field mustard	extracellular	61.25	61.08
AT2G41800.1	Thale cress	extracellular, vacuole	60.16	60.0
CDY48764	Canola	cytosol	32.25	59.2
Bra004650.1-P	Field mustard	extracellular	59.08	58.76
CDY14785	Canola	extracellular, vacuole	58.54	58.38
Bra016917.1-P	Field mustard	extracellular	58.81	58.02
CDY06908	Canola	extracellular	58.54	57.75
Solyc01g087540.2.1	Tomato	extracellular	55.28	55.59
GSMUA_Achr9P25300_001	Banana	extracellular, vacuole	53.66	54.55
CDY48765	Canola	extracellular	60.43	50.34
CDX79912	Canola	extracellular, vacuole	60.98	50.0
EER93244	Sorghum	extracellular, vacuole	50.95	48.7
TraesCS5D01G469800.1	Wheat	extracellular, vacuole	50.14	46.6
Os03t0807700-01	Rice	plastid	49.59	46.56
Zm00001d034547_P002	Maize	extracellular, vacuole	50.68	45.17
Solyc06g067910.2.1	Tomato	nucleus	45.53	45.16
Solyc08g067030.2.1	Tomato	extracellular	45.26	45.01
Solyc12g042930.1.1	Tomato	endoplasmic reticulum, golgi	45.53	44.21
Solyc03g120040.2.1	Tomato	extracellular, nucleus	30.89	44.19
HORVU5Hr1G109880.2	Barley	golgi, vacuole	49.59	43.88
GSMUA_Achr6P29630_001	Banana	cytosol, plastid	36.59	42.72
TraesCS5A01G458700.1	Wheat	extracellular, golgi	49.59	42.36
Solyc02g070540.2.1	Tomato	endoplasmic reticulum, vacuole	41.73	39.39
Os07t0206900-01	Rice	cytosol, peroxisome	8.67	32.65

Protein Annotations

EnsemblPlants:Solyc04g015610.2.1	EnsemblPlantsGene:Solyc04g015610.2	Gene3D:2.60.120.260	InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979
PANTHER:PTHR31265	PANTHER:PTHR31265:SF5	PFAM:PF04862	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF49785
UniParc:UPI0002766BCD	UniProt:K4BQ63	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr4:+:5920270..5922833

Molecular Weight (calculated)

40499.3 Da

IEP (calculated)

8.763

GRAVY (calculated)

-0.133

Length

369 amino acids

Sequence
(BLAST)

001: MASFFSLSFI LIFSLYNSFA YANTVPYLDD LLENGNFEQG PKPSNMNKTV IIGKHSLPKW EINSIVEWVS GGPQEGGFYF PIPRGAHAVR LGNEASISQY
101: VKVKPNTIYS LTFGATRTCA QDEVLTVSAG GMSSDLNIQT LYSADGGDTY AWGFKSTSNL VKVTFHNPGT QEDPTCGPLI DHVAIKEMLM ATYTKGNLVK
201: NGGFELGPHV FKNFSTGVLV LPLKQDKYSP IPGWMVQFAK PSKYIDSKHF FVPSGNAAVE LIGGRETGIA QTIRTIPKQF YNLTFTIGDA QNSCHGTMTV
301: QAFAGKASTQ VTFVSNGKGW SKTATFKFQA DSIRTTIAFY NPYYHTKIHD FGHMCGPVID DVSLVHVRK

Best Arabidopsis Sequence Match ( AT2G41810.1 )
(BLAST)

001: MSLVLSLCLV FLCSLVHGSH SLPAQRTPHL DGLLPNGNFE QIPNKSNMRK RQIIGKYSLP HWEISGHVEL VSGGPQPGGF YFAVPRGVHA ARLGNLASIS
101: QYVKVKSGLV YSLTFGVTRT CAQDENIRIS VPGQTNELPI QTLFSTNGGD TYAWAFKATS DLVKVTFYNP GVQEDPTCGP IVDAVAIKEI LPLRYTKGNL
201: VKNGGFETGP HVFSNFSTGI LIPAKIQDLI SPLPGWIVES LKPVKYIDNR HFKVPSGLAA IELVAGRESA IAQIIRTVSG KNYILSFVVG DAHNGCHGSM
301: MVEAFAGISA FKVTFESNDK GAFKVGRFAF RADSNRTRIT FYSGFYHTKL HDFGHLCGPV LDNVSVFLAH

Arabidopsis Description

Uncharacterized protein At2g41810 [Source:UniProtKB/TrEMBL;Acc:O22939]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.