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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • plastid 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY06908 Canola extracellular 97.86 97.86
Bra004650.1-P Field mustard extracellular 87.7 88.41
AT2G41800.1 Thale cress extracellular, vacuole 85.29 86.22
Bra004651.1-P Field mustard extracellular 79.68 80.54
VIT_08s0007g08460.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 63.64 64.85
GSMUA_Achr9P25300_001 Banana extracellular, vacuole 57.22 58.95
Solyc04g015610.2.1 Tomato extracellular 58.02 58.81
Solyc04g015620.2.1 Tomato plastid 56.15 56.76
Bra029693.1-P Field mustard extracellular 55.08 56.44
Bra040046.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 55.08 56.44
PGSC0003DMT400081713 Potato endoplasmic reticulum, extracellular, plasma membrane 30.48 55.61
Bra023324.1-P Field mustard cytoskeleton, cytosol, peroxisome 49.2 54.12
EER93244 Sorghum extracellular, vacuole 55.35 53.63
Os03t0807700-01 Rice plastid 55.08 52.42
Bra011349.1-P Field mustard golgi 50.8 52.05
TraesCS5D01G469800.1 Wheat extracellular, vacuole 54.28 51.13
Zm00001d034547_P002 Maize extracellular, vacuole 55.08 49.76
Bra009841.1-P Field mustard extracellular 48.4 49.32
Bra020500.1-P Field mustard extracellular 47.59 48.63
HORVU5Hr1G109880.2 Barley golgi, vacuole 54.01 48.44
Bra003558.1-P Field mustard extracellular 47.59 48.24
GSMUA_Achr6P29630_001 Banana cytosol, plastid 40.37 47.78
Bra035192.1-P Field mustard extracellular 43.05 47.21
TraesCS5A01G458700.1 Wheat extracellular, golgi 54.28 46.99
Os07t0206900-01 Rice cytosol, peroxisome 10.43 39.8
Bra005419.1-P Field mustard plasma membrane 39.04 36.5
Bra032349.1-P Field mustard extracellular, golgi, plasma membrane 39.84 36.43
Bra006241.1-P Field mustard extracellular, plasma membrane 30.48 29.61
Protein Annotations
EnsemblPlants:Bra016917.1EnsemblPlants:Bra016917.1-PEnsemblPlantsGene:Bra016917InterPro:DUF642InterPro:Galactose-bd-like_sfInterPro:IPR008979
PANTHER:PTHR31265PANTHER:PTHR31265:SF5PFAM:PF04862SEG:segSignalP:SignalP-noTMSUPFAM:SSF49785
UniParc:UPI0002543700UniProt:M4DK88MapMan:35.2:::
Description
AT2G41800 (E=5e-184) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41810.1); Has 156 Blast hits to 155 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA04:-:17612422..17614007
Molecular Weight (calculated)
40909.5 Da
IEP (calculated)
9.418
GRAVY (calculated)
-0.028
Length
374 amino acids
Sequence
(BLAST)
001: MSLYHSLCFL LLLSLCHGSH SHNRGVRPRR TPHLDGLLPN GNFEHIPLKS NMKGRQIIGT NSLPHWQISG HVELVSGGPQ PGGFYFPVPR GVHAVRLGSL
101: ASISQDVRVK RGLVYSLTFG ATKSCAQDEN IKVSVPGQAN ELPIQTVFSS DGGDTYAWAF RAMSDVVRVT FHNPGVQEDR TCGPLVDVVA IKEILPLQYN
201: RGNLVKNGGF EIGPHIFTNY STGILIPAKI QDIISPLPGW IIESLKPVKY IDERHYKVPF GLAAVELVAG RESAIAQIIR TVAGKAYMLS FTVGDAQNGC
301: HGSMMVEAFA GKQPFKLPFV SEGKGAYKTG HFKFVADSNR TRLTFYSAFY HTKLHDFGHL CGPVLDSVIV LPAH
Best Arabidopsis Sequence Match ( AT2G41800.1 )
(BLAST)
001: MSLYHSLSIF LLLSLCHGSY SLQPRRVPHL DGILPNGNFE ITPLKSNMKG RQIIGANSLP HWEIAGHVEL VSGGPQPGGF YFPVPRGVHA VRLGNLGTIS
101: QNVRVKSGLV YSLTFGATRT CAQDENIKVS VPGQANELPL QTVFSSDGGD TYAWAFKATS DVVKVTFHNP GVQEDRTCGP LLDVVAIKEI LPLRYTRGNL
201: VKNGGFEIGP HVFANFSTGI LIPARIQDFI SPLPGWIVES LKPVKYIDRR HFKVPYGQGA VELVAGRESA IAQIIRTIAG KAYMLSFAVG DAQNGCHGSM
301: MVEAFAGREP FKLSFMSEGK GAFKTGHFRF VADSDRTRLT FYSAFYHTKL HDFGHLCGPV LDSVVVTLAR
Arabidopsis Description
At2g41800/T11A7.10 [Source:UniProtKB/TrEMBL;Acc:O22940]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.