Factsheet for Bra032349.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra039198.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29980.1	Bra039198.1-P	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26302	Canola	extracellular, golgi, plasma membrane	99.02	99.02
AT1G29980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	90.71	91.15
Bra005419.1-P	Field mustard	plasma membrane	77.02	78.75
KRH11195	Soybean	endoplasmic reticulum	72.62	75.57
PGSC0003DMT400054520	Potato	endoplasmic reticulum, vacuole	71.39	74.68
Solyc02g070540.2.1	Tomato	endoplasmic reticulum, vacuole	71.15	74.42
VIT_10s0003g03250.t01	Wine grape	extracellular, golgi, plasma membrane	71.15	74.23
KRH21062	Soybean	endoplasmic reticulum	70.66	73.54
Os01t0531400-00	Rice	cytosol	45.48	67.39
TraesCS3D01G294100.1	Wheat	plasma membrane	62.1	64.47
TraesCS3B01G328900.1	Wheat	plasma membrane	61.61	63.96
TraesCS3A01G294300.1	Wheat	extracellular, golgi, plasma membrane	61.61	63.8
Os01t0756600-01	Rice	plasma membrane	62.1	63.66
GSMUA_Achr4P15090_001	Banana	cytosol, endoplasmic reticulum, peroxisome	58.44	63.06
EES01494	Sorghum	plasma membrane	60.88	62.56
Zm00001d043414_P001	Maize	plasma membrane	60.64	62.47
Zm00001d012718_P004	Maize	endoplasmic reticulum, plasma membrane	59.66	58.23
GSMUA_Achr3P31400_001	Banana	plasma membrane	62.84	57.37
HORVU3Hr1G072860.3	Barley	plastid	59.66	53.74
Bra023324.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	40.59	48.82
Bra011349.1-P	Field mustard	golgi	43.03	48.22
Bra020500.1-P	Field mustard	extracellular	41.08	45.9
Bra009841.1-P	Field mustard	extracellular	41.08	45.78
Bra035192.1-P	Field mustard	extracellular	37.9	45.45
Bra003558.1-P	Field mustard	extracellular	39.61	43.9
Bra029693.1-P	Field mustard	extracellular	38.63	43.29
Bra040046.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	38.14	42.74
Bra004650.1-P	Field mustard	extracellular	37.16	40.97
Bra004651.1-P	Field mustard	extracellular	36.43	40.27
Bra016917.1-P	Field mustard	extracellular	36.43	39.84
Bra006241.1-P	Field mustard	extracellular, plasma membrane	27.87	29.61

Protein Annotations

EnsemblPlants:Bra032349.1	EnsemblPlants:Bra032349.1-P	EnsemblPlantsGene:Bra032349	Gene3D:2.60.120.260	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0016020	GO:GO:0016021	InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979
PANTHER:PTHR31265	PANTHER:PTHR31265:SF1	PFAM:PF04862	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF49785
TMHMM:TMhelix	UniParc:UPI000254262C	UniProt:M4EU67	MapMan:35.2	:	:

Description

AT1G29980 (E=2e-198) | INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34510.1); Has 180 Blast hits to 163 proteins in 15 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA09:+:22369011..22371875

Molecular Weight (calculated)

44259.2 Da

IEP (calculated)

4.441

GRAVY (calculated)

-0.097

Length

409 amino acids

Sequence
(BLAST)

001: MAPNNNRCKW SSIFMLLLSL SLAVSVAVAT DKAPLVEDGL VINGDFETSP SSGFPDDGVV DGPGEIPSWK SNGTVELINS GQKQGGMILI VPQGRHAVRL
101: GNDAEISQEL TVEKGSVYSV TFSAARTCAQ LESINVSVAS VNANEGDTLA SRDVDLQTLY NVQGWDPYAW AFEAEEDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KLKDNAVING DFEEGPWMFR NTSLGVLLPT NLDEETSSLP GWNVESNRAV RFVDSDHFSV PGGKRAVELL SGKEGIISQM VETKADKPYL
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSTFE KVGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFAGSKKT GAGFGFGVSV
401: FVLLVIGLV

Best Arabidopsis Sequence Match ( AT1G29980.1 )
(BLAST)

001: MVPSNNRCKW SSIFLFLLSV SVAVLVAVAD DKSPAVEDGL VINGDFETSP SSGFPDDGVT DGPSDIPSWK SNGTVELINS GQKQGGMILI VPQGRHAVRL
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV

Arabidopsis Description

Uncharacterized protein T1P2.9 [Source:UniProtKB/TrEMBL;Acc:Q9C8S1]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.