Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003674_P001 | |
| Zm00001d003675_P001 | |
| Zm00001d025412_P001 | |
| Zm00001d034777_P005 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0531400-00 | Rice | cytosol | 58.95 | 89.49 |
| Zm00001d043414_P001 | Maize | plasma membrane | 84.73 | 89.42 |
| EES01494 | Sorghum | plasma membrane | 84.49 | 88.94 |
| Os01t0756600-01 | Rice | plasma membrane | 80.19 | 84.21 |
| TraesCS3D01G294100.1 | Wheat | plasma membrane | 74.94 | 79.7 |
| TraesCS3B01G328900.1 | Wheat | plasma membrane | 74.94 | 79.7 |
| TraesCS3A01G294300.1 | Wheat | extracellular, golgi, plasma membrane | 73.99 | 78.48 |
| HORVU3Hr1G072860.3 | Barley | plastid | 74.94 | 69.16 |
| GSMUA_Achr4P15090_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 62.29 | 68.87 |
| KRH11195 | Soybean | endoplasmic reticulum | 59.43 | 63.36 |
| VIT_10s0003g03250.t01 | Wine grape | extracellular, golgi, plasma membrane | 59.19 | 63.27 |
| KRH21062 | Soybean | endoplasmic reticulum | 58.71 | 62.6 |
| PGSC0003DMT400054520 | Potato | endoplasmic reticulum, vacuole | 57.76 | 61.89 |
| Solyc02g070540.2.1 | Tomato | endoplasmic reticulum, vacuole | 57.52 | 61.64 |
| GSMUA_Achr3P31400_001 | Banana | plasma membrane | 64.44 | 60.27 |
| CDY26302 | Canola | extracellular, golgi, plasma membrane | 58.47 | 59.9 |
| Bra032349.1-P | Field mustard | extracellular, golgi, plasma membrane | 58.23 | 59.66 |
| AT1G29980.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 57.52 | 59.21 |
| CDX84311 | Canola | plasma membrane | 55.85 | 58.5 |
| CDY17255 | Canola | plasma membrane | 55.61 | 58.25 |
| AT2G34510.1 | Thale cress | vacuole | 55.61 | 58.1 |
| Bra005419.1-P | Field mustard | plasma membrane | 55.37 | 58.0 |
| CDX99870 | Canola | plasma membrane | 53.7 | 57.69 |
| Zm00001d044455_P001 | Maize | plasma membrane | 36.99 | 40.68 |
| Zm00001d003183_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 36.04 | 39.74 |
| Zm00001d003184_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, peroxisome | 33.41 | 39.0 |
| Zm00001d003186_P001 | Maize | extracellular | 35.08 | 38.79 |
| Zm00001d034547_P002 | Maize | extracellular, vacuole | 36.75 | 37.2 |
| Zm00001d003187_P002 | Maize | endoplasmic reticulum, plasma membrane | 32.7 | 34.51 |
| Zm00001d025754_P001 | Maize | golgi | 32.7 | 33.58 |
| Zm00001d015715_P001 | Maize | plasma membrane | 37.95 | 27.13 |
| Zm00001d003185_P001 | Maize | extracellular | 36.28 | 21.97 |
Protein Annotations
| EnsemblPlants:Zm00001d012718_P004 | EnsemblPlants:Zm00001d012718_T004 | EnsemblPlantsGene:Zm00001d012718 | EntrezGene:100276367 | Gene3D:2.60.120.260 | InterPro:DUF642 |
| InterPro:Galactose-bd-like_sf | InterPro:IPR008979 | PANTHER:PTHR31265 | PANTHER:PTHR31265:SF1 | PFAM:PF04862 | ProteinID:AQL00397.1 |
| SEG:seg | SUPFAM:SSF49785 | UniParc:UPI0008448A07 | UniProt:A0A1D6GBD6 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr8:-:179120531..179123051
Molecular Weight (calculated)
45045.7 Da
IEP (calculated)
4.685
GRAVY (calculated)
0.052
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAMEHSKLL LPPFLFICRW IVQFCTIQRQ IKRNGGSTKF TFTLTSVFLS SCITGLLSNG DFETAPAGGF VRSASVAEGA SSIPGWTING TVELISAGQH
101: QGGMILIVPQ GDHAVRLGND ASVGQVVDVE KGSDYAVTFS AARTCAQLEA LNVSVLGGVS QTVDLQTLYN IEGWDAYALA FQATEEQAHL QFMNPGMEDD
201: PTCGPILDNV AVKKLFTPDK PKDNVVLNGD FEEGPWMFPN TSFGVLLPTN LDEQTSAIPG WMIESNRAVR YIDSDQYKVP QGKRAIELLS GKEGIISQMV
301: ETTPEKVYSL TAMLGAAGDS CQPPMAIMAF AGDQAQNFHY SPLGNATSQA VNVTFTARAE RTRVAFYSVY YNTRSDDHSS LCGPVIDDVR VWGLNTAAGL
401: KASAGLVLGI VGVVGMVLF
101: QGGMILIVPQ GDHAVRLGND ASVGQVVDVE KGSDYAVTFS AARTCAQLEA LNVSVLGGVS QTVDLQTLYN IEGWDAYALA FQATEEQAHL QFMNPGMEDD
201: PTCGPILDNV AVKKLFTPDK PKDNVVLNGD FEEGPWMFPN TSFGVLLPTN LDEQTSAIPG WMIESNRAVR YIDSDQYKVP QGKRAIELLS GKEGIISQMV
301: ETTPEKVYSL TAMLGAAGDS CQPPMAIMAF AGDQAQNFHY SPLGNATSQA VNVTFTARAE RTRVAFYSVY YNTRSDDHSS LCGPVIDDVR VWGLNTAAGL
401: KASAGLVLGI VGVVGMVLF
001: MTGLVINGDF ETSPSSGFPD DGVTDGPSDI PSWKSNGTVE LINSGQKQGG MILIVPQGRH AVRLGNDAEI SQDLTVEKGF VYSVTFSAAR TCAQLESINV
101: SVASVNADAD DMLASRNVDL QTLYSVQGWD PYAWAFEAED DHVRLVFKNP GMEDDPTCGP IIDDIAIKKL FTPDKPKDNA VINGDFEDGP WMFRNTSLGV
201: LLPTNLDEEI SSLPGWTVES NRAVRFVDSD HFSVPKGKRA VELLSGKEGI ISQMVETKAD KPYILSFSLG HAGDKCKEPL AIMAFAGDQA QNFHYMAQAN
301: SSFEKAGLNF TAKADRTRVA FYSVYYNTRT DDMSSLCGPV IDDVRVWFSG SKRIGAGFGF WVFVLLVVGL V
101: SVASVNADAD DMLASRNVDL QTLYSVQGWD PYAWAFEAED DHVRLVFKNP GMEDDPTCGP IIDDIAIKKL FTPDKPKDNA VINGDFEDGP WMFRNTSLGV
201: LLPTNLDEEI SSLPGWTVES NRAVRFVDSD HFSVPKGKRA VELLSGKEGI ISQMVETKAD KPYILSFSLG HAGDKCKEPL AIMAFAGDQA QNFHYMAQAN
301: SSFEKAGLNF TAKADRTRVA FYSVYYNTRT DDMSSLCGPV IDDVRVWFSG SKRIGAGFGF WVFVLLVVGL V
Arabidopsis Description
Uncharacterized protein T1P2.9 [Source:UniProtKB/TrEMBL;Acc:Q9C8S1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.