Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 6
- extracellular 5
- vacuole 4
- plasma membrane 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032349.1-P | Field mustard | extracellular, golgi, plasma membrane | 91.15 | 90.71 |
| CDX99870 | Canola | plasma membrane | 86.49 | 90.26 |
| CDY26302 | Canola | extracellular, golgi, plasma membrane | 90.66 | 90.22 |
| AT2G34510.1 | Thale cress | vacuole | 78.38 | 79.55 |
| KRH11195 | Soybean | endoplasmic reticulum | 71.74 | 74.3 |
| Solyc02g070540.2.1 | Tomato | endoplasmic reticulum, vacuole | 71.25 | 74.17 |
| PGSC0003DMT400054520 | Potato | endoplasmic reticulum, vacuole | 71.01 | 73.91 |
| VIT_10s0003g03250.t01 | Wine grape | extracellular, golgi, plasma membrane | 70.76 | 73.47 |
| KRH21062 | Soybean | endoplasmic reticulum | 69.78 | 72.26 |
| Os01t0531400-00 | Rice | cytosol | 45.45 | 67.03 |
| TraesCS3D01G294100.1 | Wheat | plasma membrane | 61.43 | 63.45 |
| Os01t0756600-01 | Rice | plasma membrane | 61.92 | 63.16 |
| GSMUA_Achr4P15090_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 58.72 | 63.06 |
| TraesCS3B01G328900.1 | Wheat | plasma membrane | 60.93 | 62.94 |
| TraesCS3A01G294300.1 | Wheat | extracellular, golgi, plasma membrane | 60.93 | 62.78 |
| Zm00001d043414_P001 | Maize | plasma membrane | 60.44 | 61.96 |
| EES01494 | Sorghum | plasma membrane | 60.44 | 61.81 |
| Zm00001d012718_P004 | Maize | endoplasmic reticulum, plasma membrane | 59.21 | 57.52 |
| GSMUA_Achr3P31400_001 | Banana | plasma membrane | 63.15 | 57.37 |
| HORVU3Hr1G072860.3 | Barley | plastid | 59.71 | 53.52 |
| AT4G32460.1 | Thale cress | endoplasmic reticulum, golgi | 43.24 | 48.22 |
| AT5G11420.1 | Thale cress | extracellular, golgi, vacuole | 42.51 | 47.27 |
| AT5G25460.1 | Thale cress | endoplasmic reticulum, extracellular | 41.77 | 46.07 |
| AT1G80240.1 | Thale cress | endoplasmic reticulum | 40.29 | 44.32 |
| AT2G41800.1 | Thale cress | extracellular, vacuole | 38.82 | 42.7 |
| AT2G41810.1 | Thale cress | extracellular, vacuole | 38.08 | 41.89 |
| AT3G08030.1 | Thale cress | extracellular | 37.1 | 41.37 |
| AT5G14150.2 | Thale cress | extracellular, plasma membrane, vacuole | 29.48 | 31.33 |
Protein Annotations
| Gene3D:2.60.120.260 | MapMan:35.2 | EntrezGene:839877 | ProteinID:AAG52057.1 | ProteinID:AEE31164.1 | ArrayExpress:AT1G29980 |
| EnsemblPlantsGene:AT1G29980 | RefSeq:AT1G29980 | TAIR:AT1G29980 | RefSeq:AT1G29980-TAIR-G | EnsemblPlants:AT1G29980.1 | TAIR:AT1G29980.1 |
| Unigene:At.17979 | InterPro:DUF642 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 |
| GO:GO:0031225 | InterPro:Galactose-bd-like_sf | InterPro:IPR008979 | RefSeq:NP_564344.1 | PFAM:PF04862 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR31265 | PANTHER:PTHR31265:SF1 | UniProt:Q9C8S1 | SUPFAM:SSF49785 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI00000A775C | SEG:seg | : | : | : |
Description
Uncharacterized protein T1P2.9 [Source:UniProtKB/TrEMBL;Acc:Q9C8S1]
Coordinates
chr1:-:10503239..10506189
Molecular Weight (calculated)
44298.2 Da
IEP (calculated)
4.431
GRAVY (calculated)
-0.086
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPSNNRCKW SSIFLFLLSV SVAVLVAVAD DKSPAVEDGL VINGDFETSP SSGFPDDGVT DGPSDIPSWK SNGTVELINS GQKQGGMILI VPQGRHAVRL
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.