Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400010254 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29980.1 | PGSC0003DMT400010254 | AT2G23420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g070540.2.1 | Tomato | endoplasmic reticulum, vacuole | 96.93 | 96.93 |
| KRH11195 | Soybean | endoplasmic reticulum | 74.94 | 74.55 |
| KRH21062 | Soybean | endoplasmic reticulum | 74.42 | 74.05 |
| VIT_10s0003g03250.t01 | Wine grape | extracellular, golgi, plasma membrane | 73.4 | 73.21 |
| CDY26302 | Canola | extracellular, golgi, plasma membrane | 74.94 | 71.64 |
| Bra032349.1-P | Field mustard | extracellular, golgi, plasma membrane | 74.68 | 71.39 |
| AT1G29980.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 73.91 | 71.01 |
| CDX84311 | Canola | plasma membrane | 72.63 | 71.0 |
| CDY17255 | Canola | plasma membrane | 72.63 | 71.0 |
| Bra005419.1-P | Field mustard | plasma membrane | 72.38 | 70.75 |
| CDX99870 | Canola | plasma membrane | 70.08 | 70.26 |
| AT2G34510.1 | Thale cress | vacuole | 71.87 | 70.07 |
| Os01t0531400-00 | Rice | cytosol | 47.31 | 67.03 |
| GSMUA_Achr4P15090_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 63.43 | 65.44 |
| Zm00001d043414_P001 | Maize | plasma membrane | 63.94 | 62.97 |
| EES01494 | Sorghum | plasma membrane | 63.94 | 62.81 |
| TraesCS3D01G294100.1 | Wheat | plasma membrane | 63.17 | 62.69 |
| TraesCS3B01G328900.1 | Wheat | plasma membrane | 62.92 | 62.44 |
| Os01t0756600-01 | Rice | plasma membrane | 63.68 | 62.41 |
| TraesCS3A01G294300.1 | Wheat | extracellular, golgi, plasma membrane | 62.92 | 62.28 |
| GSMUA_Achr3P31400_001 | Banana | plasma membrane | 67.01 | 58.48 |
| Zm00001d012718_P004 | Maize | endoplasmic reticulum, plasma membrane | 61.89 | 57.76 |
| HORVU3Hr1G072860.3 | Barley | plastid | 62.92 | 54.19 |
| PGSC0003DMT400074806 | Potato | extracellular | 47.31 | 49.87 |
| PGSC0003DMT400073682 | Potato | cytosol | 40.92 | 47.76 |
| PGSC0003DMT400014547 | Potato | extracellular | 43.99 | 46.74 |
| PGSC0003DMT400073388 | Potato | mitochondrion | 43.48 | 45.82 |
| PGSC0003DMT400017671 | Potato | extracellular | 42.2 | 44.96 |
| PGSC0003DMT400081713 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 21.23 | 40.49 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400054520 | EnsemblPlantsGene:PGSC0003DMG400021161 | EntrezGene:102582541 | Gene3D:2.60.120.260 | InterPro:DUF642 | InterPro:Galactose-bd-like_sf |
| InterPro:IPR008979 | PANTHER:PTHR31265 | PANTHER:PTHR31265:SF1 | PFAM:PF04862 | PGSC:PGSC0003DMG400021161 | RefSeq:XP_006352963.1 |
| SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF49785 | UniParc:UPI0002956384 | UniProt:M1BWH5 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021161]
Coordinates
chr2:+:29738035..29742240
Molecular Weight (calculated)
42789.5 Da
IEP (calculated)
4.556
GRAVY (calculated)
-0.140
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIASSSTKF KWVTAFLLLL TCSAAGQVQD GSLVNGNFET PPSGGFSSGD GFSDGPSEIP SWKSNGTVEV VESGQKQGGM ILIVPQGRHA VRLGNDAEIS
101: QELKVEKGSI YSITFSAART CAQLESLNVS VPPASQTIDL QTLYNVQGWD SYAWAFQAEE DDVRVVFTNP GMEDDPTCGP IIDDIAIKKL FVPAKSKNNA
201: VLNGDFEEGP WMFRNTSLGV LLPTNLDEET SSLPGWIVES NRAVRYIDTY HFTVPEGKRA IELLSGKEGI ISQMVETKPN KPYRLTFLFG HAGDSCKEPL
301: AIMAFAGDQA QNIHYTPNFN SSFQNANLNF TAKADRTRIA FYSIYYNTRS DDMSSLCGPV VDDVRVELSA SSRVKVFGFG FMFWLLVLVL G
101: QELKVEKGSI YSITFSAART CAQLESLNVS VPPASQTIDL QTLYNVQGWD SYAWAFQAEE DDVRVVFTNP GMEDDPTCGP IIDDIAIKKL FVPAKSKNNA
201: VLNGDFEEGP WMFRNTSLGV LLPTNLDEET SSLPGWIVES NRAVRYIDTY HFTVPEGKRA IELLSGKEGI ISQMVETKPN KPYRLTFLFG HAGDSCKEPL
301: AIMAFAGDQA QNIHYTPNFN SSFQNANLNF TAKADRTRIA FYSIYYNTRS DDMSSLCGPV VDDVRVELSA SSRVKVFGFG FMFWLLVLVL G
001: MVPSNNRCKW SSIFLFLLSV SVAVLVAVAD DKSPAVEDGL VINGDFETSP SSGFPDDGVT DGPSDIPSWK SNGTVELINS GQKQGGMILI VPQGRHAVRL
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV
Arabidopsis Description
Uncharacterized protein T1P2.9 [Source:UniProtKB/TrEMBL;Acc:Q9C8S1]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.