Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 3
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr2P08220_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29980.1 | GSMUA_Achr11P... | AT2G23420.1 | 21798944 |
| AT1G29980.1 | GSMUA_Achr2P08220_001 | AT2G23420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P15090_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 69.64 | 82.32 |
| Os01t0531400-00 | Rice | cytosol | 47.54 | 77.17 |
| Os01t0756600-01 | Rice | plasma membrane | 64.06 | 71.93 |
| EES01494 | Sorghum | plasma membrane | 62.5 | 70.35 |
| Zm00001d043414_P001 | Maize | plasma membrane | 62.05 | 70.03 |
| TraesCS3B01G328900.1 | Wheat | plasma membrane | 61.16 | 69.54 |
| TraesCS3D01G294100.1 | Wheat | plasma membrane | 60.94 | 69.29 |
| Solyc02g070540.2.1 | Tomato | endoplasmic reticulum, vacuole | 59.82 | 68.54 |
| TraesCS3A01G294300.1 | Wheat | extracellular, golgi, plasma membrane | 60.27 | 68.35 |
| PGSC0003DMT400054520 | Potato | endoplasmic reticulum, vacuole | 58.48 | 67.01 |
| KRH11195 | Soybean | endoplasmic reticulum | 58.48 | 66.67 |
| KRH21062 | Soybean | endoplasmic reticulum | 57.81 | 65.9 |
| VIT_10s0003g03250.t01 | Wine grape | extracellular, golgi, plasma membrane | 56.7 | 64.8 |
| Zm00001d012718_P004 | Maize | endoplasmic reticulum, plasma membrane | 60.27 | 64.44 |
| CDY17255 | Canola | plasma membrane | 56.47 | 63.25 |
| CDX84311 | Canola | plasma membrane | 56.47 | 63.25 |
| AT1G29980.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 57.37 | 63.15 |
| AT2G34510.1 | Thale cress | vacuole | 56.47 | 63.09 |
| CDY26302 | Canola | extracellular, golgi, plasma membrane | 57.59 | 63.08 |
| Bra005419.1-P | Field mustard | plasma membrane | 56.25 | 63.0 |
| Bra032349.1-P | Field mustard | extracellular, golgi, plasma membrane | 57.37 | 62.84 |
| CDX99870 | Canola | plasma membrane | 53.57 | 61.54 |
| HORVU3Hr1G072860.3 | Barley | plastid | 59.15 | 58.37 |
| GSMUA_Achr1P14570_001 | Banana | extracellular | 40.62 | 49.46 |
| GSMUA_Achr7P08400_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 39.96 | 48.77 |
| GSMUA_Achr2P17020_001 | Banana | endoplasmic reticulum, vacuole | 39.51 | 48.23 |
| GSMUA_Achr2P08300_001 | Banana | extracellular | 39.06 | 47.43 |
| GSMUA_Achr9P25300_001 | Banana | extracellular, vacuole | 37.5 | 46.28 |
| GSMUA_Achr6P29630_001 | Banana | cytosol, plastid | 26.56 | 37.66 |
| GSMUA_Achr6P12280_001 | Banana | cytosol, peroxisome, plasma membrane | 14.06 | 30.14 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P31400_001 | EnsemblPlants:GSMUA_Achr3T31400_001 | EnsemblPlantsGene:GSMUA_Achr3G31400_001 | Gene3D:2.60.120.260 | InterPro:DUF642 | InterPro:Galactose-bd-like_sf |
| InterPro:IPR008979 | PANTHER:PTHR31265 | PANTHER:PTHR31265:SF1 | PFAM:PF04862 | SEG:seg | SUPFAM:SSF49785 |
| UniParc:UPI000296530E | UniProt:M0SJF4 | MapMan:35.2 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G31400_001]
Coordinates
chr3:+:29729357..29732740
Molecular Weight (calculated)
47913.6 Da
IEP (calculated)
4.469
GRAVY (calculated)
-0.102
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPKTKQRES AIKAEGVVNG PLRECVTVSL EEGKGGRTRS PPVPESEMPR SATQRAWLPP LGALLLLLLL FARRAAAALE DGLVNNGAFE TVPAGGASGS
101: GLGEGVASLP GWTINGTVEL VESGQKQGGM ILIVPEGVHA VRLGNDAEIS QELQLEKGST YAVTFSAART CAQLESLNVS VWPATQTVDL QTLYSVEGWD
201: AYAWAFQAQA EDGAVSKLSF KNPGMEDDPT CGPIIDNIAI KKLFTPDRPE DNAVVNGDFE EGPWMFPNAS LGVLLPTNLD EETSALSGWM VESNRAVRYV
301: DSYHFDVPQG KRAIELLSGK EGIISQMVET TPEKQYNLTF TVGAAGDSCQ TPLAVMAFAG DQAQNFHYSP TGNATHQPAN ITFTARAERT RIAFYSVYYN
401: TRSDDRSSLC GPVVDEVRVW GISGSPAVKS SWIASLLGLV VAVIMVVA
101: GLGEGVASLP GWTINGTVEL VESGQKQGGM ILIVPEGVHA VRLGNDAEIS QELQLEKGST YAVTFSAART CAQLESLNVS VWPATQTVDL QTLYSVEGWD
201: AYAWAFQAQA EDGAVSKLSF KNPGMEDDPT CGPIIDNIAI KKLFTPDRPE DNAVVNGDFE EGPWMFPNAS LGVLLPTNLD EETSALSGWM VESNRAVRYV
301: DSYHFDVPQG KRAIELLSGK EGIISQMVET TPEKQYNLTF TVGAAGDSCQ TPLAVMAFAG DQAQNFHYSP TGNATHQPAN ITFTARAERT RIAFYSVYYN
401: TRSDDRSSLC GPVVDEVRVW GISGSPAVKS SWIASLLGLV VAVIMVVA
001: MVPSNNRCKW SSIFLFLLSV SVAVLVAVAD DKSPAVEDGL VINGDFETSP SSGFPDDGVT DGPSDIPSWK SNGTVELINS GQKQGGMILI VPQGRHAVRL
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV
Arabidopsis Description
Uncharacterized protein T1P2.9 [Source:UniProtKB/TrEMBL;Acc:Q9C8S1]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.