Factsheet for TraesCS3B01G328900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G302400.1
TraesCS2B01G318300.2
TraesCS2D01G301100.1
TraesCS4A01G354500.1
TraesCS5B01G517900.3
TraesCS5D01G517600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29980.1	TraesCS2A01G302400.1	AT2G23420.1	21798944
AT1G29980.1	TraesCS2B01G318300.2	AT2G23420.1	21798944
AT1G29980.1	TraesCS2D01G301100.1	AT2G23420.1	21798944
AT1G29980.1	TraesCS4A01G354500.1	AT2G23420.1	21798944
AT1G29980.1	TraesCS5B01G517900.3	AT2G23420.1	21798944
AT1G29980.1	TraesCS5D01G517600.1	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G294100.1	Wheat	plasma membrane	98.98	98.98
TraesCS3A01G294300.1	Wheat	extracellular, golgi, plasma membrane	98.73	98.48
Os01t0531400-00	Rice	cytosol	62.94	89.86
Os01t0756600-01	Rice	plasma membrane	89.09	87.97
Zm00001d043414_P001	Maize	plasma membrane	85.03	84.38
EES01494	Sorghum	plasma membrane	84.77	83.92
HORVU3Hr1G072860.3	Barley	plastid	90.36	78.41
Zm00001d012718_P004	Maize	endoplasmic reticulum, plasma membrane	79.7	74.94
GSMUA_Achr4P15090_001	Banana	cytosol, endoplasmic reticulum, peroxisome	64.47	67.02
Solyc02g070540.2.1	Tomato	endoplasmic reticulum, vacuole	62.94	63.43
KRH11195	Soybean	endoplasmic reticulum	63.2	63.36
VIT_10s0003g03250.t01	Wine grape	extracellular, golgi, plasma membrane	62.94	63.27
PGSC0003DMT400054520	Potato	endoplasmic reticulum, vacuole	62.44	62.92
KRH21062	Soybean	endoplasmic reticulum	62.44	62.6
CDY26302	Canola	extracellular, golgi, plasma membrane	63.96	61.61
Bra032349.1-P	Field mustard	extracellular, golgi, plasma membrane	63.96	61.61
GSMUA_Achr3P31400_001	Banana	plasma membrane	69.54	61.16
AT1G29980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	62.94	60.93
CDY17255	Canola	plasma membrane	61.68	60.75
CDX84311	Canola	plasma membrane	61.68	60.75
Bra005419.1-P	Field mustard	plasma membrane	61.42	60.5
AT2G34510.1	Thale cress	vacuole	61.17	60.1
CDX99870	Canola	plasma membrane	59.14	59.74
TraesCS7B01G353600.2	Wheat	extracellular	42.13	44.86
TraesCS6B01G207200.1	Wheat	extracellular	42.39	44.65
TraesCS2B01G369700.1	Wheat	endoplasmic reticulum, golgi	40.1	41.69
TraesCS2B01G369800.1	Wheat	extracellular	39.34	41.33
TraesCS2B01G369500.1	Wheat	cytosol	37.31	41.06
TraesCS2B01G369900.1	Wheat	extracellular	37.31	40.27
TraesCS2B01G369300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	38.58	40.11
TraesCS2B01G455800.1	Wheat	golgi	37.82	39.95
TraesCS5B01G390400.1	Wheat	plastid	30.71	39.41
TraesCS2B01G440300.1	Wheat	extracellular	38.07	39.06

Protein Annotations

EnsemblPlants:TraesCS3B01G328900.1	EnsemblPlantsGene:TraesCS3B01G328900	Gene3D:2.60.120.260	InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979
PANTHER:PTHR31265	PANTHER:PTHR31265:SF1	PFAM:PF04862	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF49785
TMHMM:TMhelix	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:531399336..531403292

Molecular Weight (calculated)

41889.8 Da

IEP (calculated)

4.284

GRAVY (calculated)

0.076

Length

394 amino acids

Sequence
(BLAST)

001: MERGLALLGL GLALLLLAPS RRLASAAPVE DGLLMNGDFE TAPPGGFVKS ASVSEGAAIP SWTINGTVEL ISAGQHQGGM ILIVPQGDHA VRLGNDAGIG
101: QVVEVEKGSE YAITFSAART CAQLESLNIS AGSVSQTVDL QTLYSIEGWD AYALAFQAVD EQASIEFRNP GMEDDPTCGP ILDNVAIKKL FSPDKAKENM
201: VINGDFEEGP WMFPNTSFGV LLPTNLDEQT SALPGWMIES NRAVRFVDSD QYTVPQGKRA IELLSGKEGI ISQMVETTPQ KAYTLTFTLG SAGDSCQPPM
301: AVMAFAGDQA QNFHYSPMGN ATSQAVNVNF TARAERTRVA LYSVYYNTRS DDHSSLCGPV IDDVRVWGLN GAAGLKASIA LLIAMASVIV LVLF

Best Arabidopsis Sequence Match ( AT2G34510.1 )
(BLAST)

001: MMLYSNNSWR SNSILILLLG LSIVAAADSA GKTSPVEDGL VVNGDFETPP SNGFPDDAII EDTSEIPSWR SDGTVELIKS GQKQGGMILI VPEGRHAVRL
101: GNDAEISQEL TVEKGSIYSV TFSAARTCAQ LESLNVSVAS SDEPIASQTI DLQTVYSVQG WDPYAWAFEA VVDRVRLVFK NPGMEDDPTC GPIIDDIAVK
201: KLFTPDKPKG NAVINGDFEE GPWMFRNTTL GVLLPTNLDE EISSLPGWTV ESNRAVRFID SDHFSVPEGK RALELLSGKE GIISQMVETK ANIPYKMSFS
301: LGHAGDKCKE PLAVMAFAGD QAQNFHYMAQ ANSSFERSEL NFTAKAERTR IAFYSIYYNT RTDDMTSLCG PVIDDVKVWF SGSSRIGFSF PLFILLSLVF
401: I

Arabidopsis Description

Uncharacterized protein At2g34510 [Source:UniProtKB/TrEMBL;Acc:O64696]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.