Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr2P08220_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29980.1 | GSMUA_Achr11P... | AT2G23420.1 | 21798944 |
| AT1G29980.1 | GSMUA_Achr2P08220_001 | AT2G23420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0531400-00 | Rice | cytosol | 54.35 | 74.64 |
| GSMUA_Achr3P31400_001 | Banana | plasma membrane | 82.32 | 69.64 |
| Os01t0756600-01 | Rice | plasma membrane | 69.92 | 66.42 |
| EES01494 | Sorghum | plasma membrane | 69.13 | 65.83 |
| Zm00001d043414_P001 | Maize | plasma membrane | 68.87 | 65.74 |
| TraesCS3B01G328900.1 | Wheat | plasma membrane | 67.02 | 64.47 |
| TraesCS3D01G294100.1 | Wheat | plasma membrane | 66.75 | 64.21 |
| Solyc02g070540.2.1 | Tomato | endoplasmic reticulum, vacuole | 66.23 | 64.19 |
| PGSC0003DMT400054520 | Potato | endoplasmic reticulum, vacuole | 65.44 | 63.43 |
| TraesCS3A01G294300.1 | Wheat | extracellular, golgi, plasma membrane | 65.96 | 63.29 |
| VIT_10s0003g03250.t01 | Wine grape | extracellular, golgi, plasma membrane | 65.44 | 63.27 |
| Zm00001d012718_P004 | Maize | endoplasmic reticulum, plasma membrane | 68.87 | 62.29 |
| KRH11195 | Soybean | endoplasmic reticulum | 63.32 | 61.07 |
| KRH21062 | Soybean | endoplasmic reticulum | 62.8 | 60.56 |
| CDY17255 | Canola | plasma membrane | 62.53 | 59.25 |
| CDX84311 | Canola | plasma membrane | 62.53 | 59.25 |
| Bra005419.1-P | Field mustard | plasma membrane | 62.27 | 59.0 |
| AT1G29980.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 63.06 | 58.72 |
| CDY26302 | Canola | extracellular, golgi, plasma membrane | 63.32 | 58.68 |
| Bra032349.1-P | Field mustard | extracellular, golgi, plasma membrane | 63.06 | 58.44 |
| CDX99870 | Canola | plasma membrane | 59.37 | 57.69 |
| AT2G34510.1 | Thale cress | vacuole | 60.42 | 57.11 |
| HORVU3Hr1G072860.3 | Barley | plastid | 66.75 | 55.73 |
| GSMUA_Achr1P14570_001 | Banana | extracellular | 45.12 | 46.47 |
| GSMUA_Achr7P08400_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 44.85 | 46.32 |
| GSMUA_Achr2P08300_001 | Banana | extracellular | 44.85 | 46.07 |
| GSMUA_Achr2P17020_001 | Banana | endoplasmic reticulum, vacuole | 44.59 | 46.05 |
| GSMUA_Achr9P25300_001 | Banana | extracellular, vacuole | 41.16 | 42.98 |
| GSMUA_Achr6P29630_001 | Banana | cytosol, plastid | 31.93 | 38.29 |
| GSMUA_Achr6P12280_001 | Banana | cytosol, peroxisome, plasma membrane | 15.57 | 28.23 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P15090_001 | EnsemblPlants:GSMUA_Achr4T15090_001 | EnsemblPlantsGene:GSMUA_Achr4G15090_001 | Gene3D:2.60.120.260 | InterPro:DUF642 | InterPro:Galactose-bd-like_sf |
| InterPro:IPR008979 | PANTHER:PTHR31265 | PANTHER:PTHR31265:SF1 | PFAM:PF04862 | SEG:seg | SUPFAM:SSF49785 |
| UniParc:UPI000296980D | UniProt:M0SP24 | MapMan:35.2 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G15090_001]
Coordinates
chr4:+:11382905..11384305
Molecular Weight (calculated)
40634.8 Da
IEP (calculated)
4.345
GRAVY (calculated)
-0.047
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIATVITHS VGLLNNGDFE TVGAVSTGGK GDGITSFPGW TVNGTVELVE SGQKQGGMIL IVPEGVHAVR LGNDAEISQS LQLEKGATYA VTFSAARTCA
101: QLETLNVSVW PASQAVDLQT LYSVEGWDAY AWAFQAPAEA EVDGAESRLS FRNPGMEDDP TCGPIIDDVA IKKLFAPERP QDDAVVNGDF EEGPWMLPNS
201: SLGVLLPTNL DEETSALPGW MVESNRAVRY IDSYHFDVPQ GKRAVELLSG KEGIISQMVE TTPQKQYSLT FTIGAAGDSC QAPMAIMAFA GDQAQSFHYS
301: PTGNATHQPA NVTFTARAER TRIAFYSVYY NTRSDDRSSL CGPVVDEVRV RGVSKAAASS SKWVACLLSL AVPVLMVFF
101: QLETLNVSVW PASQAVDLQT LYSVEGWDAY AWAFQAPAEA EVDGAESRLS FRNPGMEDDP TCGPIIDDVA IKKLFAPERP QDDAVVNGDF EEGPWMLPNS
201: SLGVLLPTNL DEETSALPGW MVESNRAVRY IDSYHFDVPQ GKRAVELLSG KEGIISQMVE TTPQKQYSLT FTIGAAGDSC QAPMAIMAFA GDQAQSFHYS
301: PTGNATHQPA NVTFTARAER TRIAFYSVYY NTRSDDRSSL CGPVVDEVRV RGVSKAAASS SKWVACLLSL AVPVLMVFF
001: MTGLVINGDF ETSPSSGFPD DGVTDGPSDI PSWKSNGTVE LINSGQKQGG MILIVPQGRH AVRLGNDAEI SQDLTVEKGF VYSVTFSAAR TCAQLESINV
101: SVASVNADAD DMLASRNVDL QTLYSVQGWD PYAWAFEAED DHVRLVFKNP GMEDDPTCGP IIDDIAIKKL FTPDKPKDNA VINGDFEDGP WMFRNTSLGV
201: LLPTNLDEEI SSLPGWTVES NRAVRFVDSD HFSVPKGKRA VELLSGKEGI ISQMVETKAD KPYILSFSLG HAGDKCKEPL AIMAFAGDQA QNFHYMAQAN
301: SSFEKAGLNF TAKADRTRVA FYSVYYNTRT DDMSSLCGPV IDDVRVWFSG SKRIGAGFGF WVFVLLVVGL V
101: SVASVNADAD DMLASRNVDL QTLYSVQGWD PYAWAFEAED DHVRLVFKNP GMEDDPTCGP IIDDIAIKKL FTPDKPKDNA VINGDFEDGP WMFRNTSLGV
201: LLPTNLDEEI SSLPGWTVES NRAVRFVDSD HFSVPKGKRA VELLSGKEGI ISQMVETKAD KPYILSFSLG HAGDKCKEPL AIMAFAGDQA QNFHYMAQAN
301: SSFEKAGLNF TAKADRTRVA FYSVYYNTRT DDMSSLCGPV IDDVRVWFSG SKRIGAGFGF WVFVLLVVGL V
Arabidopsis Description
Uncharacterized protein T1P2.9 [Source:UniProtKB/TrEMBL;Acc:Q9C8S1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.