Factsheet for VIT_10s0003g03250.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g00460.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29980.1	VIT_07s0031g00460.t01	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g070540.2.1	Tomato	endoplasmic reticulum, vacuole	73.72	73.91
PGSC0003DMT400054520	Potato	endoplasmic reticulum, vacuole	73.21	73.4
KRH11195	Soybean	endoplasmic reticulum	73.47	73.28
KRH21062	Soybean	endoplasmic reticulum	72.96	72.77
CDY26302	Canola	extracellular, golgi, plasma membrane	74.74	71.64
Bra032349.1-P	Field mustard	extracellular, golgi, plasma membrane	74.23	71.15
AT1G29980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	73.47	70.76
CDX99870	Canola	plasma membrane	69.9	70.26
Bra005419.1-P	Field mustard	plasma membrane	71.43	70.0
CDX84311	Canola	plasma membrane	71.17	69.75
CDY17255	Canola	plasma membrane	71.17	69.75
Os01t0531400-00	Rice	cytosol	48.98	69.57
AT2G34510.1	Thale cress	vacuole	69.39	67.83
GSMUA_Achr4P15090_001	Banana	cytosol, endoplasmic reticulum, peroxisome	63.27	65.44
Os01t0756600-01	Rice	plasma membrane	65.05	63.91
EES01494	Sorghum	plasma membrane	64.54	63.57
Zm00001d043414_P001	Maize	plasma membrane	64.03	63.22
TraesCS3D01G294100.1	Wheat	plasma membrane	63.52	63.2
TraesCS3B01G328900.1	Wheat	plasma membrane	63.27	62.94
TraesCS3A01G294300.1	Wheat	extracellular, golgi, plasma membrane	63.27	62.78
Zm00001d012718_P004	Maize	endoplasmic reticulum, plasma membrane	63.27	59.19
GSMUA_Achr3P31400_001	Banana	plasma membrane	64.8	56.7
HORVU3Hr1G072860.3	Barley	plastid	63.27	54.63
VIT_04s0008g05010.t01	Wine grape	extracellular, golgi	44.13	47.01
VIT_13s0064g00460.t01	Wine grape	extracellular	40.82	44.44
VIT_08s0007g08460.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	39.29	41.96
VIT_09s0002g05930.t01	Wine grape	endoplasmic reticulum, extracellular	43.11	41.73
VIT_14s0068g02080.t01	Wine grape	extracellular, plasma membrane, vacuole	27.55	27.2

Protein Annotations

EntrezGene:100253669	wikigene:100253669	Gene3D:2.60.120.260	MapMan:35.2	ProteinID:CBI30867	ProteinID:CBI30867.3
UniProt:D7TK45	InterPro:DUF642	EMBL:FN595992	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Galactose-bd-like_sf	InterPro:IPR008979	EntrezGene:LOC100253669	wikigene:LOC100253669	PFAM:PF04862	PANTHER:PTHR31265
PANTHER:PTHR31265:SF1	SUPFAM:SSF49785	SignalP:SignalP-noTM	TIGR:TC64977	TMHMM:TMhelix	UniParc:UPI0001BE3488
ArrayExpress:VIT_10s0003g03250	EnsemblPlantsGene:VIT_10s0003g03250	EnsemblPlants:VIT_10s0003g03250.t01	unigene:Vvi.5681	RefSeq:XP_002275370	RefSeq:XP_002275370.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:5400225..5403573

Molecular Weight (calculated)

42677.3 Da

IEP (calculated)

4.556

GRAVY (calculated)

-0.140

Length

392 amino acids

Sequence
(BLAST)

001: MVQNSRTSKW VSLCVVFFAH FVSVMADDGP LLNGDFESPP TGGFSNEGLV DGPTTIPNWK TNGTVELVES GQKQGGMILI VPQGKHAVRL GNDAEISQEM
101: KVEKGFIYSI TFSAARTCAQ LESINVSVGA ASQNIDLQTL YNVQGWDPYA WAFSAEEEDA HVVFRNPGME DDPTCGPIID DVAIKKLFTP DPPKDNAVTN
201: GDFEEGPWMY KNASLGVLLP TNLDEETSSL PGWIVESNRA VRFIDSDHFS VPQGKRGIEL LSGKEGIISQ MVATTPNKPY KLTFSLGHAG DSCKQPLAIM
301: AFAGDQAQNI HYVANANSTF ETVDLNFTSK AERTRVAFYS VYYNTRSDDM SSLCGPVVDD VKVWFSGARR NGLGRLSLGF GFGLFVLLLV SV

Best Arabidopsis Sequence Match ( AT1G29980.1 )
(BLAST)

001: MVPSNNRCKW SSIFLFLLSV SVAVLVAVAD DKSPAVEDGL VINGDFETSP SSGFPDDGVT DGPSDIPSWK SNGTVELINS GQKQGGMILI VPQGRHAVRL
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV

Arabidopsis Description

Uncharacterized protein T1P2.9 [Source:UniProtKB/TrEMBL;Acc:Q9C8S1]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.