CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04597
KRH28456
KRH57934
KRH63322
KRH77015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29980.1	KRH04597	AT2G23420.1	21798944
AT1G29980.1	KRH28456	AT2G23420.1	21798944
AT1G29980.1	KRH57934	AT2G23420.1	21798944
AT1G29980.1	KRH63322	AT2G23420.1	21798944
AT1G29980.1	KRH77015	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21062	Soybean	endoplasmic reticulum	95.93	95.93
PGSC0003DMT400054520	Potato	endoplasmic reticulum, vacuole	74.55	74.94
Solyc02g070540.2.1	Tomato	endoplasmic reticulum, vacuole	74.3	74.68
VIT_10s0003g03250.t01	Wine grape	extracellular, golgi, plasma membrane	73.28	73.47
CDY26302	Canola	extracellular, golgi, plasma membrane	75.83	72.86
Bra032349.1-P	Field mustard	extracellular, golgi, plasma membrane	75.57	72.62
CDX99870	Canola	plasma membrane	71.25	71.79
AT1G29980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	74.3	71.74
Os01t0531400-00	Rice	cytosol	49.87	71.01
AT2G34510.1	Thale cress	vacuole	72.01	70.57
CDX84311	Canola	plasma membrane	71.76	70.5
CDY17255	Canola	plasma membrane	71.76	70.5
Bra005419.1-P	Field mustard	plasma membrane	71.5	70.25
Os01t0756600-01	Rice	plasma membrane	65.9	64.91
Zm00001d043414_P001	Maize	plasma membrane	65.14	64.48
EES01494	Sorghum	plasma membrane	64.63	63.82
GSMUA_Achr4P15090_001	Banana	cytosol, endoplasmic reticulum, peroxisome	61.07	63.32
TraesCS3D01G294100.1	Wheat	plasma membrane	63.36	63.2
TraesCS3B01G328900.1	Wheat	plasma membrane	63.36	63.2
TraesCS3A01G294300.1	Wheat	extracellular, golgi, plasma membrane	63.1	62.78
Zm00001d012718_P004	Maize	endoplasmic reticulum, plasma membrane	63.36	59.43
GSMUA_Achr3P31400_001	Banana	plasma membrane	66.67	58.48
HORVU3Hr1G072860.3	Barley	plastid	62.6	54.19
KRH52489	Soybean	extracellular, golgi	44.27	47.03
KRH05109	Soybean	nucleus	43.51	46.72
KRH52488	Soybean	extracellular	43.26	46.58
KRH16010	Soybean	nucleus	43.0	46.17
KRH09784	Soybean	nucleus	40.97	43.05
KRH23537	Soybean	nucleus	40.97	43.05
KRH32968	Soybean	endoplasmic reticulum	38.93	41.69
KRH13974	Soybean	nucleus	37.66	40.33
KRH44408	Soybean	golgi	41.48	37.3
KRH23881	Soybean	extracellular	32.32	35.98
KRH39918	Soybean	endoplasmic reticulum, extracellular, golgi	35.11	35.38

Protein Annotations

EMBL:ACUP02009189	EMBL:ACUP02009190	EnsemblPlants:KRH11195	EnsemblPlantsGene:GLYMA_15G094700	EntrezGene:100807088	Gene3D:2.60.120.260
InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979	PANTHER:PTHR31265	PANTHER:PTHR31265:SF1	PFAM:PF04862
ProteinID:KRH11195	ProteinID:KRH11195.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF49785	UniParc:UPI000233B167
UniProt:I1MF39	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:7384145..7395023

Molecular Weight (calculated)

43047.0 Da

IEP (calculated)

4.622

GRAVY (calculated)

-0.143

Length

393 amino acids

Sequence
(BLAST)

001: MARSSTRMKW VSIFTLLFLS HSPLTTFAED GLVANGDFEV SPSSGFPNEA IVEGPSEVPN WKSNGNVELV ESGQKQGGMI LIVPQGRHAV RLGNDAEISQ
101: ELPVEKGSIY SLTFCAARTC AQLESINVSV APASQTVDLQ TLYNVQGWNP YAVSFNADED TFRLVFKNPG MEDDPTCGPI IDNIAIKKLF TPDKPKDNAV
201: INGDFEEGPW MFRNTSLGVL LPTNLDEEAS SLPGWIVESN RAVRYIDSDH YSVPQGRRAI ELLSGKEGII SQMVETKPDK LYSLTFSLGH ADDKCKEPLA
301: VMAFAGDQAQ NIHYTPNSNS TFQTANVNFT AKAERTRIAF YSIYYNTRSD DMSSLCGPVV DDVRVWFSGS NGLRGLGLGR LVLVILGLVL VLM

Best Arabidopsis Sequence Match ( AT1G29980.1 )
(BLAST)

001: MVPSNNRCKW SSIFLFLLSV SVAVLVAVAD DKSPAVEDGL VINGDFETSP SSGFPDDGVT DGPSDIPSWK SNGTVELINS GQKQGGMILI VPQGRHAVRL
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV

Arabidopsis Description

Uncharacterized protein T1P2.9 [Source:UniProtKB/TrEMBL;Acc:Q9C8S1]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.