CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13974	Soybean	nucleus	96.73	96.73
KRH23881	Soybean	extracellular	76.02	79.04
KRH39918	Soybean	endoplasmic reticulum, extracellular, golgi	80.93	76.15
VIT_13s0064g00460.t01	Wine grape	extracellular	74.39	75.83
PGSC0003DMT400017671	Potato	extracellular	75.48	75.48
Solyc01g087540.2.1	Tomato	extracellular	74.66	74.66
CDY28002	Canola	extracellular	66.76	67.12
Bra029693.1-P	Field mustard	extracellular	66.48	66.85
CDY35979	Canola	extracellular	66.48	66.85
CDY22149	Canola	extracellular	66.21	66.58
AT3G08030.1	Thale cress	extracellular	65.94	66.3
Bra040046.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	65.94	66.3
GSMUA_Achr9P25300_001	Banana	extracellular, vacuole	62.4	63.09
EER93244	Sorghum	extracellular, vacuole	61.04	58.03
Os03t0807700-01	Rice	plastid	61.04	57.0
TraesCS5D01G469800.1	Wheat	extracellular, vacuole	59.4	54.91
Zm00001d034547_P002	Maize	extracellular, vacuole	61.58	54.59
HORVU5Hr1G109880.2	Barley	golgi, vacuole	59.4	52.28
KRH16010	Soybean	nucleus	51.77	51.91
KRH05109	Soybean	nucleus	51.77	51.91
TraesCS5A01G458700.1	Wheat	extracellular, golgi	59.67	50.69
GSMUA_Achr6P29630_001	Banana	cytosol, plastid	43.6	50.63
KRH52488	Soybean	extracellular	48.77	49.04
KRH09784	Soybean	nucleus	48.77	47.86
KRH23537	Soybean	nucleus	48.23	47.33
KRH52489	Soybean	extracellular, golgi	46.59	46.22
KRH44408	Soybean	golgi	49.05	41.19
Os07t0206900-01	Rice	cytosol, peroxisome	10.9	40.82
KRH11195	Soybean	endoplasmic reticulum	41.69	38.93
KRH21062	Soybean	endoplasmic reticulum	41.14	38.42

Protein Annotations

EMBL:ACUP02006210	EMBL:BT097930	EnsemblPlants:KRH32968	EnsemblPlantsGene:GLYMA_10G090100	EntrezGene:100804119	Gene3D:2.60.120.260
InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979	PANTHER:PTHR31265	PANTHER:PTHR31265:SF2	PFAM:PF04862
ProteinID:KRH32968	ProteinID:KRH32968.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0001B16892	UniProt:C6TJT0
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:12008560..12011433

Molecular Weight (calculated)

39900.2 Da

IEP (calculated)

9.214

GRAVY (calculated)

0.045

Length

367 amino acids

Sequence
(BLAST)

001: MAVTLTSTLF LALLFAASAF AALQPRVPEA YLQNGNFEEQ PNPKYLKKTK LFGKYALPKW EINGLVEYVS GGPQPGGMFF PVTHGIHAVR LGNDASISQS
101: IKVKPGQLYA LILGASRTCA QDEVLRISVP PQTGDVPLQT LYSLNGDVIA WGFKATSSVV KVTFHNPGVQ EDPSCGPLLD AIAIREFYPP MPTRVNLVKN
201: PGFEEGPFPI FNSTNGVLLP PQQQDGFSPL PGWIIESLKA VKFIDSKHFN VPFGLGAVEL VAGRESAIAQ IIRTVTNKVY NITFSVGDAK NGCHGSMMVE
301: AFAAKDTFKA PFKSEGKGTF KTVSFKFKAI APRTRLTFYS SFYHTRIDDY GSLCGPVVDQ VIVFPVA

Best Arabidopsis Sequence Match ( AT3G08030.1 )
(BLAST)

001: MAVPKAIILP ILLLICGAAL GAPASEGYLR NGNFEESPKK TDMKKTVLLG KNALPEWETT GFVEYIAGGP QPGGMYFPVA HGVHAVRLGN EATISQKLEV
101: KPGSLYALTF GASRTCAQDE VLRVSVPSQS GDLPLQTLYN SFGGDVYAWA FVAKTSQVTV TFHNPGVQED PACGPLLDAV AIKELVHPIY TRGNLVKNGG
201: FEEGPHRLVN STQGVLLPPK QEDLTSPLPG WIIESLKAVK FIDSKYFNVP FGHAAIELVA GKESAIAQVI RTSPGQTYTL SFVVGDAKND CHGSMMVEAF
301: AARDTLKVPH TSVGGGHVKT ASFKFKAVEA RTRITFFSGF YHTKKTDTVS LCGPVIDEIV VSHVA

Arabidopsis Description

F17A17.37 protein [Source:UniProtKB/TrEMBL;Acc:Q9SFB1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.