Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 6
- extracellular 7
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35979 | Canola | extracellular | 91.23 | 91.23 |
| CDY28002 | Canola | extracellular | 91.23 | 91.23 |
| CDY22149 | Canola | extracellular | 91.23 | 91.23 |
| Bra040046.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 91.23 | 91.23 |
| Bra029693.1-P | Field mustard | extracellular | 91.23 | 91.23 |
| VIT_13s0064g00460.t01 | Wine grape | extracellular | 70.68 | 71.67 |
| PGSC0003DMT400017671 | Potato | extracellular | 70.41 | 70.03 |
| Solyc01g087540.2.1 | Tomato | extracellular | 69.86 | 69.48 |
| KRH13974 | Soybean | nucleus | 66.58 | 66.21 |
| KRH32968 | Soybean | endoplasmic reticulum | 66.3 | 65.94 |
| GSMUA_Achr9P25300_001 | Banana | extracellular, vacuole | 63.56 | 63.91 |
| KRH23881 | Soybean | extracellular | 60.55 | 62.61 |
| KRH39918 | Soybean | endoplasmic reticulum, extracellular, golgi | 64.38 | 60.26 |
| AT2G41800.1 | Thale cress | extracellular, vacuole | 58.63 | 57.84 |
| AT2G41810.1 | Thale cress | extracellular, vacuole | 57.53 | 56.76 |
| EER93244 | Sorghum | extracellular, vacuole | 59.18 | 55.96 |
| AT5G25460.1 | Thale cress | endoplasmic reticulum, extracellular | 55.89 | 55.28 |
| Os03t0807700-01 | Rice | plastid | 58.36 | 54.2 |
| AT5G11420.1 | Thale cress | extracellular, golgi, vacuole | 53.42 | 53.28 |
| AT4G32460.1 | Thale cress | endoplasmic reticulum, golgi | 53.15 | 53.15 |
| TraesCS5D01G469800.1 | Wheat | extracellular, vacuole | 57.53 | 52.9 |
| Zm00001d034547_P002 | Maize | extracellular, vacuole | 59.18 | 52.17 |
| AT1G80240.1 | Thale cress | endoplasmic reticulum | 51.23 | 50.54 |
| HORVU5Hr1G109880.2 | Barley | golgi, vacuole | 57.26 | 50.12 |
| GSMUA_Achr6P29630_001 | Banana | cytosol, plastid | 43.01 | 49.68 |
| TraesCS5A01G458700.1 | Wheat | extracellular, golgi | 57.53 | 48.61 |
| Os07t0206900-01 | Rice | cytosol, peroxisome | 10.68 | 39.8 |
| AT2G34510.1 | Thale cress | vacuole | 42.19 | 38.4 |
| AT1G29980.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 41.37 | 37.1 |
| AT5G14150.2 | Thale cress | extracellular, plasma membrane, vacuole | 30.14 | 28.72 |
Protein Annotations
| Gene3D:2.60.120.260 | MapMan:35.2 | EntrezGene:819994 | UniProt:A0A178VC29 | ProteinID:AAF21213.1 | ProteinID:AAG50831.1 |
| ProteinID:AEE74632.1 | ProteinID:AEE74633.1 | ArrayExpress:AT3G08030 | EnsemblPlantsGene:AT3G08030 | RefSeq:AT3G08030 | TAIR:AT3G08030 |
| RefSeq:AT3G08030-TAIR-G | EnsemblPlants:AT3G08030.1 | TAIR:AT3G08030.1 | EMBL:AY072318 | EMBL:AY086764 | EMBL:BT000740 |
| EMBL:BT002544 | InterPro:DUF642 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0030312 | InterPro:Galactose-bd-like_sf | InterPro:IPR008979 | RefSeq:NP_566328.1 | RefSeq:NP_974254.1 |
| ProteinID:OAP03241.1 | PFAM:PF04862 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31265 | PANTHER:PTHR31265:SF2 | UniProt:Q9SFB1 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000AC0A2 | SEG:seg | : | : |
Description
F17A17.37 protein [Source:UniProtKB/TrEMBL;Acc:Q9SFB1]
Coordinates
chr3:+:2563803..2566042
Molecular Weight (calculated)
39068.0 Da
IEP (calculated)
7.639
GRAVY (calculated)
0.035
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVPKAIILP ILLLICGAAL GAPASEGYLR NGNFEESPKK TDMKKTVLLG KNALPEWETT GFVEYIAGGP QPGGMYFPVA HGVHAVRLGN EATISQKLEV
101: KPGSLYALTF GASRTCAQDE VLRVSVPSQS GDLPLQTLYN SFGGDVYAWA FVAKTSQVTV TFHNPGVQED PACGPLLDAV AIKELVHPIY TRGNLVKNGG
201: FEEGPHRLVN STQGVLLPPK QEDLTSPLPG WIIESLKAVK FIDSKYFNVP FGHAAIELVA GKESAIAQVI RTSPGQTYTL SFVVGDAKND CHGSMMVEAF
301: AARDTLKVPH TSVGGGHVKT ASFKFKAVEA RTRITFFSGF YHTKKTDTVS LCGPVIDEIV VSHVA
101: KPGSLYALTF GASRTCAQDE VLRVSVPSQS GDLPLQTLYN SFGGDVYAWA FVAKTSQVTV TFHNPGVQED PACGPLLDAV AIKELVHPIY TRGNLVKNGG
201: FEEGPHRLVN STQGVLLPPK QEDLTSPLPG WIIESLKAVK FIDSKYFNVP FGHAAIELVA GKESAIAQVI RTSPGQTYTL SFVVGDAKND CHGSMMVEAF
301: AARDTLKVPH TSVGGGHVKT ASFKFKAVEA RTRITFFSGF YHTKKTDTVS LCGPVIDEIV VSHVA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.