Factsheet for GSMUA_Achr6P29630_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P25300_001	Banana	extracellular, vacuole	64.24	55.92
Os07t0206900-01	Rice	cytosol, peroxisome	14.24	45.92
PGSC0003DMT400017671	Potato	extracellular	52.85	45.5
Solyc01g087540.2.1	Tomato	extracellular	52.53	45.23
CDX79913	Canola	cytosol	30.38	45.07
CDY48764	Canola	cytosol	28.48	44.78
VIT_13s0064g00460.t01	Wine grape	extracellular	50.95	44.72
Bra040046.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	51.58	44.66
CDY22149	Canola	extracellular	51.58	44.66
EER93244	Sorghum	extracellular, vacuole	54.43	44.56
CDY28002	Canola	extracellular	51.27	44.38
Bra029693.1-P	Field mustard	extracellular	50.95	44.11
CDY35979	Canola	extracellular	50.95	44.11
KRH32968	Soybean	endoplasmic reticulum	50.63	43.6
Os03t0807700-01	Rice	plastid	53.8	43.26
AT3G08030.1	Thale cress	extracellular	49.68	43.01
KRH13974	Soybean	nucleus	49.68	42.78
VIT_08s0007g08460.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	49.68	42.78
KRH23881	Soybean	extracellular	47.15	42.21
TraesCS5D01G469800.1	Wheat	extracellular, vacuole	52.85	42.07
Zm00001d034547_P002	Maize	extracellular, vacuole	54.43	41.55
KRH39918	Soybean	endoplasmic reticulum, extracellular, golgi	50.95	41.28
AT2G41800.1	Thale cress	extracellular, vacuole	48.1	41.08
Bra004651.1-P	Field mustard	extracellular	47.78	40.81
CDY14785	Canola	extracellular, vacuole	47.47	40.54
Bra016917.1-P	Field mustard	extracellular	47.78	40.37
CDY06908	Canola	extracellular	47.47	40.11
AT2G41810.1	Thale cress	extracellular, vacuole	46.84	40.0
HORVU5Hr1G109880.2	Barley	golgi, vacuole	52.53	39.81
GSMUA_Achr1P14570_001	Banana	extracellular	45.57	39.13
TraesCS5A01G458700.1	Wheat	extracellular, golgi	53.48	39.12
GSMUA_Achr2P08300_001	Banana	extracellular	45.57	39.02
Bra004650.1-P	Field mustard	extracellular	45.57	38.81
GSMUA_Achr7P08400_001	Banana	endoplasmic reticulum, extracellular, vacuole	44.62	38.42
GSMUA_Achr2P17020_001	Banana	endoplasmic reticulum, vacuole	43.35	37.33
Solyc04g015620.2.1	Tomato	plastid	43.04	36.76
Solyc04g015610.2.1	Tomato	extracellular	42.72	36.59
CDY48765	Canola	extracellular	47.15	33.63
CDX79912	Canola	extracellular, vacuole	47.15	33.11
PGSC0003DMT400081713	Potato	endoplasmic reticulum, extracellular, plasma membrane	21.2	32.68
GSMUA_Achr4P15090_001	Banana	cytosol, endoplasmic reticulum, peroxisome	38.29	31.93
GSMUA_Achr3P31400_001	Banana	plasma membrane	37.66	26.56
GSMUA_Achr6P12280_001	Banana	cytosol, peroxisome, plasma membrane	13.92	21.05

Protein Annotations

EnsemblPlants:GSMUA_Achr6P29630_001	EnsemblPlants:GSMUA_Achr6T29630_001	EnsemblPlantsGene:GSMUA_Achr6G29630_001	InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979
PANTHER:PTHR31265	PANTHER:PTHR31265:SF2	PFAM:PF04862	SUPFAM:SSF49785	UniParc:UPI0002969E34	UniProt:M0TBA8
MapMan:35.2	:	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G29630_001]

Coordinates

chr6:-:29827218..29828982

Molecular Weight (calculated)

34345.2 Da

IEP (calculated)

8.573

GRAVY (calculated)

0.080

Length

316 amino acids

Sequence
(BLAST)

001: MYFTVPHGVH AVRLGNDASV SQDITVEPGT LYSLTFSATR TCAQDEVLRV SVPPLAGDLP IQTLYSSTGG DTYAWGFIPT KTTVQVIFHN VGIEEDPACG
101: PLFDAVFVTQ LNQRDCLINL IFYAVEEISL LSLWPSSLRC LRDTTWLRMA ASKKGLMSSK TPQPASSFLP SRKTAHLPSL AGSSNLKAVR FIDAEHHTVP
201: FGQFAVELVA GRESVIAQVI RTISNRVYEL SFVVGDAKNG CHGSMMVEAF AGNGTVKARF HSQGKGGHQA ASLRFMALAN RTRITFYAAY YHISVSNPGS
301: LCGPVLDQVR VYPIKA

Best Arabidopsis Sequence Match ( AT2G41800.1 )
(BLAST)

001: MSLYHSLSIF LLLSLCHGSY SLQPRRVPHL DGILPNGNFE ITPLKSNMKG RQIIGANSLP HWEIAGHVEL VSGGPQPGGF YFPVPRGVHA VRLGNLGTIS
101: QNVRVKSGLV YSLTFGATRT CAQDENIKVS VPGQANELPL QTVFSSDGGD TYAWAFKATS DVVKVTFHNP GVQEDRTCGP LLDVVAIKEI LPLRYTRGNL
201: VKNGGFEIGP HVFANFSTGI LIPARIQDFI SPLPGWIVES LKPVKYIDRR HFKVPYGQGA VELVAGRESA IAQIIRTIAG KAYMLSFAVG DAQNGCHGSM
301: MVEAFAGREP FKLSFMSEGK GAFKTGHFRF VADSDRTRLT FYSAFYHTKL HDFGHLCGPV LDSVVVTLAR

Arabidopsis Description

At2g41800/T11A7.10 [Source:UniProtKB/TrEMBL;Acc:O22940]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.