Factsheet for Solyc01g087540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

extracellular: 20496099
extracellular: 22892874
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20496099 doi

D Dahal, A Pich, HP Braun, K Wydra

Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017671	Potato	extracellular	98.64	98.64
VIT_13s0064g00460.t01	Wine grape	extracellular	79.02	80.56
KRH32968	Soybean	endoplasmic reticulum	74.66	74.66
KRH13974	Soybean	nucleus	73.57	73.57
Bra029693.1-P	Field mustard	extracellular	70.3	70.68
CDY35979	Canola	extracellular	70.3	70.68
CDY28002	Canola	extracellular	70.03	70.41
AT3G08030.1	Thale cress	extracellular	69.48	69.86
Bra040046.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	68.94	69.32
CDY22149	Canola	extracellular	68.66	69.04
KRH23881	Soybean	extracellular	66.21	68.84
GSMUA_Achr9P25300_001	Banana	extracellular, vacuole	66.76	67.49
KRH39918	Soybean	endoplasmic reticulum, extracellular, golgi	70.84	66.67
EER93244	Sorghum	extracellular, vacuole	61.58	58.55
Os03t0807700-01	Rice	plastid	60.49	56.49
TraesCS5D01G469800.1	Wheat	extracellular, vacuole	60.49	55.92
Solyc04g015620.2.1	Tomato	plastid	56.13	55.68
Solyc04g015610.2.1	Tomato	extracellular	55.59	55.28
Zm00001d034547_P002	Maize	extracellular, vacuole	61.58	54.59
HORVU5Hr1G109880.2	Barley	golgi, vacuole	60.22	53.0
Solyc08g067030.2.1	Tomato	extracellular	53.41	52.83
GSMUA_Achr6P29630_001	Banana	cytosol, plastid	45.23	52.53
Solyc03g120040.2.1	Tomato	extracellular, nucleus	36.24	51.55
TraesCS5A01G458700.1	Wheat	extracellular, golgi	60.49	51.39
Solyc06g067910.2.1	Tomato	nucleus	51.77	51.08
Solyc12g042930.1.1	Tomato	endoplasmic reticulum, golgi	49.59	47.89
Solyc02g070540.2.1	Tomato	endoplasmic reticulum, vacuole	44.69	41.94
Os07t0206900-01	Rice	cytosol, peroxisome	10.9	40.82

Protein Annotations

EnsemblPlants:Solyc01g087540.2.1	EnsemblPlantsGene:Solyc01g087540.2	Gene3D:2.60.120.260	InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979
PANTHER:PTHR31265	PANTHER:PTHR31265:SF2	PFAM:PF04862	SignalP:SignalP-noTM	SUPFAM:SSF49785	UniParc:UPI0002763389
UniProt:K4AYE4	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr1:+:82481594..82483967

Molecular Weight (calculated)

39723.0 Da

IEP (calculated)

9.197

GRAVY (calculated)

0.025

Length

367 amino acids

Sequence
(BLAST)

001: MVFKVSVLIL FSFLFTASAV RPAPPLEGLL PNGNFEELPK AKDLKKKTVL QGKYALPKWE INGLVEYISG GPQPGGMYFA VAHGVHAVRL GNEASISQTI
101: PVKKGSLYAL TFGASRTCAQ EEVLRVSVPP QTGDLPLQTL YSSNGGDTYA WGFYATSNVV KITFHNPGVQ EDPACGPLLD AVAIKELFPP RPTRVNLVKN
201: AGFEEGPHLL INSSHGVLLP PKQEDLTSPL PGWIIESLKA VKFLDSAHFN VPFGQAAVEL LAGRESALAQ IIRTVPKKVY AFTFSVGDAK NGCHGDMMVE
301: AFAAKETFKV PFKSQGKGSF KTVSFKFTAI ADRTRITFYS SFYHTKINDY GALCGPVVDE VKVTPVA

Best Arabidopsis Sequence Match ( AT3G08030.1 )
(BLAST)

001: MAVPKAIILP ILLLICGAAL GAPASEGYLR NGNFEESPKK TDMKKTVLLG KNALPEWETT GFVEYIAGGP QPGGMYFPVA HGVHAVRLGN EATISQKLEV
101: KPGSLYALTF GASRTCAQDE VLRVSVPSQS GDLPLQTLYN SFGGDVYAWA FVAKTSQVTV TFHNPGVQED PACGPLLDAV AIKELVHPIY TRGNLVKNGG
201: FEEGPHRLVN STQGVLLPPK QEDLTSPLPG WIIESLKAVK FIDSKYFNVP FGHAAIELVA GKESAIAQVI RTSPGQTYTL SFVVGDAKND CHGSMMVEAF
301: AARDTLKVPH TSVGGGHVKT ASFKFKAVEA RTRITFFSGF YHTKKTDTVS LCGPVIDEIV VSHVA

Arabidopsis Description

F17A17.37 protein [Source:UniProtKB/TrEMBL;Acc:Q9SFB1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.