Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 6
- plastid 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26035336
plastid: 27992503 |
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G469800.1 | Wheat | extracellular, vacuole | 89.31 | 88.41 |
| EER93244 | Sorghum | extracellular, vacuole | 86.26 | 87.82 |
| HORVU5Hr1G109880.2 | Barley | golgi, vacuole | 88.04 | 82.97 |
| TraesCS5A01G458700.1 | Wheat | extracellular, golgi | 89.06 | 81.02 |
| Zm00001d034547_P002 | Maize | extracellular, vacuole | 85.24 | 80.92 |
| GSMUA_Achr9P25300_001 | Banana | extracellular, vacuole | 64.38 | 69.7 |
| VIT_13s0064g00460.t01 | Wine grape | extracellular | 57.0 | 62.22 |
| PGSC0003DMT400017671 | Potato | extracellular | 57.25 | 61.31 |
| KRH13974 | Soybean | nucleus | 57.25 | 61.31 |
| KRH32968 | Soybean | endoplasmic reticulum | 57.0 | 61.04 |
| CDX79913 | Canola | cytosol | 32.82 | 60.56 |
| Solyc01g087540.2.1 | Tomato | extracellular | 56.49 | 60.49 |
| VIT_08s0007g08460.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 56.23 | 60.22 |
| Os07t0206900-01 | Rice | cytosol, peroxisome | 14.76 | 59.18 |
| CDY28002 | Canola | extracellular | 54.96 | 59.18 |
| CDY35979 | Canola | extracellular | 54.71 | 58.9 |
| Bra029693.1-P | Field mustard | extracellular | 54.71 | 58.9 |
| CDY48764 | Canola | cytosol | 30.03 | 58.71 |
| AT3G08030.1 | Thale cress | extracellular | 54.2 | 58.36 |
| CDY22149 | Canola | extracellular | 53.94 | 58.08 |
| Bra040046.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 53.94 | 58.08 |
| KRH23881 | Soybean | extracellular | 51.91 | 57.79 |
| Bra004651.1-P | Field mustard | extracellular | 52.67 | 55.95 |
| AT2G41800.1 | Thale cress | extracellular, vacuole | 52.42 | 55.68 |
| CDY14785 | Canola | extracellular, vacuole | 52.16 | 55.41 |
| AT2G41810.1 | Thale cress | extracellular, vacuole | 51.91 | 55.14 |
| Bra016917.1-P | Field mustard | extracellular | 52.42 | 55.08 |
| KRH39918 | Soybean | endoplasmic reticulum, extracellular, golgi | 54.45 | 54.87 |
| Bra004650.1-P | Field mustard | extracellular | 51.65 | 54.72 |
| CDY06908 | Canola | extracellular | 51.65 | 54.28 |
| GSMUA_Achr6P29630_001 | Banana | cytosol, plastid | 43.26 | 53.8 |
| Solyc04g015620.2.1 | Tomato | plastid | 46.82 | 49.73 |
| Solyc04g015610.2.1 | Tomato | extracellular | 46.56 | 49.59 |
| Os02t0205200-01 | Rice | mitochondrion, nucleus, plastid | 45.55 | 49.04 |
| PGSC0003DMT400081713 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 24.43 | 46.83 |
| Os01t0611000-01 | Rice | extracellular | 43.77 | 46.11 |
| CDX79912 | Canola | extracellular, vacuole | 52.42 | 45.78 |
| CDY48765 | Canola | extracellular | 51.15 | 45.37 |
| Os04t0494900-01 | Rice | extracellular | 41.48 | 43.24 |
| Os04t0494600-01 | Rice | extracellular | 41.22 | 42.97 |
| Os04t0494950-01 | Rice | extracellular, vacuole | 40.2 | 42.47 |
| Os01t0756600-01 | Rice | plasma membrane | 42.49 | 41.85 |
| Os01t0531400-00 | Rice | cytosol | 29.01 | 41.3 |
| Os04t0495000-00 | Rice | extracellular, golgi, vacuole | 37.66 | 39.68 |
| Os02t0527500-00 | Rice | plastid | 12.47 | 37.4 |
| Os03t0328501-00 | Rice | plastid | 21.63 | 27.33 |
| Os04t0494800-01 | Rice | extracellular | 16.54 | 17.15 |
| Os07t0132600-00 | Rice | mitochondrion, nucleus, plastid | 14.76 | 15.89 |
Protein Annotations
| EMBL:AK059286 | EnsemblPlants:Os03t0807700-01 | EnsemblPlantsGene:Os03g0807700 | EntrezGene:4334511 | Gene3D:2.60.120.260 | InterPro:DUF642 |
| InterPro:Galactose-bd-like_sf | InterPro:IPR008979 | PANTHER:PTHR31265 | PANTHER:PTHR31265:SF2 | PFAM:PF04862 | ProteinID:AAP21410.1 |
| ProteinID:ABF99455.1 | ProteinID:BAF13558.1 | ProteinID:BAS86962.1 | ProteinID:EAZ28993.1 | RefSeq:XP_015630549.1 | SEG:seg |
| SignalP:SignalP-noTM | UniParc:UPI00001909CD | UniProt:Q84M59 | MapMan:35.2 | : | : |
Description
Protein of unknown function DUF642 domain containing protein. (Os03t0807700-01);Similar to predicted protein. (Os03t0807700-02)
Coordinates
chr3:+:33765712..33767700
Molecular Weight (calculated)
41047.3 Da
IEP (calculated)
9.628
GRAVY (calculated)
0.116
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MELPRGALLL VLLAVAAAAS SAGATLAVKA PVPVPVPAPA PAHAPPQPKD AEGLLINGNF ETAPRKVNKT LIVGRHSLPG WTLRGHVEYV SGGPQPGGMF
101: FAVPHGVHAL RLGGRASASQ NVSVRPGALY ALTFAATRTC AQDEALRVAV APSLSPPADV AVRTLYSADT ADTWAWGFRA SSAAAQVTFS NPGVQEDASC
201: GPLLDAVAIK ELPTPYPTKD NLIKNEGFEI GPQVFKNSTV GVLLPPKQKD ATSPLPGWII ESLKAVRFID AAHFSVPAGQ YAVELVAGRE SAIAQVIRTV
301: ANRAYNLSFV VGDAKNGCHG SMLVEAFAGN VTQKVPFESV GNGGFKPASF RFVAAGVRTR VTFYSSYYHT KVSDGVSLCG PVLDQVKVQP LKA
101: FAVPHGVHAL RLGGRASASQ NVSVRPGALY ALTFAATRTC AQDEALRVAV APSLSPPADV AVRTLYSADT ADTWAWGFRA SSAAAQVTFS NPGVQEDASC
201: GPLLDAVAIK ELPTPYPTKD NLIKNEGFEI GPQVFKNSTV GVLLPPKQKD ATSPLPGWII ESLKAVRFID AAHFSVPAGQ YAVELVAGRE SAIAQVIRTV
301: ANRAYNLSFV VGDAKNGCHG SMLVEAFAGN VTQKVPFESV GNGGFKPASF RFVAAGVRTR VTFYSSYYHT KVSDGVSLCG PVLDQVKVQP LKA
001: MAVPKAIILP ILLLICGAAL GAPASEGYLR NGNFEESPKK TDMKKTVLLG KNALPEWETT GFVEYIAGGP QPGGMYFPVA HGVHAVRLGN EATISQKLEV
101: KPGSLYALTF GASRTCAQDE VLRVSVPSQS GDLPLQTLYN SFGGDVYAWA FVAKTSQVTV TFHNPGVQED PACGPLLDAV AIKELVHPIY TRGNLVKNGG
201: FEEGPHRLVN STQGVLLPPK QEDLTSPLPG WIIESLKAVK FIDSKYFNVP FGHAAIELVA GKESAIAQVI RTSPGQTYTL SFVVGDAKND CHGSMMVEAF
301: AARDTLKVPH TSVGGGHVKT ASFKFKAVEA RTRITFFSGF YHTKKTDTVS LCGPVIDEIV VSHVA
101: KPGSLYALTF GASRTCAQDE VLRVSVPSQS GDLPLQTLYN SFGGDVYAWA FVAKTSQVTV TFHNPGVQED PACGPLLDAV AIKELVHPIY TRGNLVKNGG
201: FEEGPHRLVN STQGVLLPPK QEDLTSPLPG WIIESLKAVK FIDSKYFNVP FGHAAIELVA GKESAIAQVI RTSPGQTYTL SFVVGDAKND CHGSMMVEAF
301: AARDTLKVPH TSVGGGHVKT ASFKFKAVEA RTRITFFSGF YHTKKTDTVS LCGPVIDEIV VSHVA
Arabidopsis Description
F17A17.37 protein [Source:UniProtKB/TrEMBL;Acc:Q9SFB1]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.