Factsheet for Os04t0494800-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0494900-01	Rice	extracellular	32.72	32.89
Os07t0206900-01	Rice	cytosol, peroxisome	8.44	32.65
KXG26630	Sorghum	extracellular	28.5	28.42
HORVU2Hr1G085430.1	Barley	endoplasmic reticulum, golgi	28.23	28.31
TraesCS2B01G369700.1	Wheat	endoplasmic reticulum, golgi	28.23	28.23
TraesCS2A01G351500.1	Wheat	extracellular, golgi	28.23	28.23
TraesCS2D01G349700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	27.44	27.44
Zm00001d003186_P001	Maize	extracellular	26.65	26.65
Os04t0494600-01	Rice	extracellular	26.12	26.26
EES11052	Sorghum	mitochondrion	25.33	25.33
Os04t0495000-00	Rice	extracellular, golgi, vacuole	24.01	24.4
Os01t0611000-01	Rice	extracellular	24.01	24.4
Os04t0494950-01	Rice	extracellular, vacuole	23.75	24.19
GSMUA_Achr1P14570_001	Banana	extracellular	22.43	23.1
GSMUA_Achr2P08300_001	Banana	extracellular	21.9	22.49
CDX80516	Canola	plastid	17.41	21.57
PGSC0003DMT400073682	Potato	cytosol	18.73	21.19
Os02t0205200-01	Rice	mitochondrion, nucleus, plastid	20.32	21.1
Os07t0132600-00	Rice	mitochondrion, nucleus, plastid	19.53	20.27
VIT_04s0008g05010.t01	Wine grape	extracellular, golgi	19.53	20.11
Bra023324.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	17.94	20.0
AT4G32460.1	Thale cress	endoplasmic reticulum, golgi	19.26	20.0
PGSC0003DMT400073388	Potato	mitochondrion	19.53	19.95
PGSC0003DMT400074806	Potato	extracellular	19.53	19.95
CDX91217	Canola	extracellular	19.26	19.95
KRH05109	Soybean	nucleus	19.26	19.95
Solyc12g042930.1.1	Tomato	endoplasmic reticulum, golgi	19.79	19.74
KRH52489	Soybean	extracellular, golgi	19.26	19.73
KRH52488	Soybean	extracellular	19.0	19.73
Solyc08g067030.2.1	Tomato	extracellular	19.26	19.68
KRH16010	Soybean	nucleus	19.0	19.67
CDX85713	Canola	extracellular	19.0	19.67
Solyc06g067910.2.1	Tomato	nucleus	19.26	19.62
VIT_09s0002g05930.t01	Wine grape	endoplasmic reticulum, extracellular	20.84	19.51
PGSC0003DMT400014547	Potato	extracellular	18.73	19.29
KRH23537	Soybean	nucleus	19.0	19.25
KRH09784	Soybean	nucleus	19.0	19.25
CDY19801	Canola	extracellular	18.73	19.19
CDX97108	Canola	golgi	18.47	19.13
Bra009841.1-P	Field mustard	extracellular	18.47	19.07
CDX80511	Canola	extracellular	18.47	19.07
CDX88180	Canola	extracellular	18.47	19.07
CDX68849	Canola	golgi	18.21	18.9
CDY54909	Canola	cytoskeleton, cytosol, peroxisome	16.89	18.88
CDY05493	Canola	extracellular	18.21	18.85
Bra020500.1-P	Field mustard	extracellular	18.21	18.85
AT5G25460.1	Thale cress	endoplasmic reticulum, extracellular	18.21	18.7
CDX75247	Canola	golgi	17.94	18.63
Bra011349.1-P	Field mustard	golgi	17.94	18.63
AT5G11420.1	Thale cress	extracellular, golgi, vacuole	17.94	18.58
Os01t0531400-00	Rice	cytosol	13.19	18.12
Os03t0328501-00	Rice	plastid	14.78	18.01
KRH44408	Soybean	golgi	19.53	16.93
Os03t0807700-01	Rice	plastid	17.15	16.54
Os01t0756600-01	Rice	plasma membrane	15.04	14.29
Solyc03g120040.2.1	Tomato	extracellular, nucleus	3.69	5.43
Os02t0527500-00	Rice	plastid	0.53	1.53

Protein Annotations

EnsemblPlants:Os04t0494800-01	EnsemblPlantsGene:Os04g0494800	EntrezGene:4336268	Gene3D:2.60.120.260	InterPro:DUF642	InterPro:Galactose-bd-like_sf
InterPro:IPR008979	PANTHER:PTHR31265	PANTHER:PTHR31265:SF8	PFAM:PF04862	ProteinID:BAF15103.1	ProteinID:BAS89874.1
RefSeq:XP_015635172.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF49785	TMHMM:TMhelix	UniParc:UPI0000DD9157
UniProt:Q0JC34	MapMan:35.2	:	:	:	:

Description

Protein of unknown function DUF642 family protein. (Os04t0494800-01);Similar to OSIGBa0103O01.11 protein. (Os04t0494800-02)

Coordinates

chr4:+:24740703..24742573

Molecular Weight (calculated)

40983.8 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.129

Length

379 amino acids

Sequence
(BLAST)

001: MRRKTEMIQT TPCVALLLLV GVAFAARSAS AITDGLLPNG NFEEAPDKSQ MNGTRVTGRY AIPQWEISGF VEYIGSGQKQ GDMLLPVPEG AYAVRLGNEA
101: SIQQRLTLTR GMHYSITFSA ARTCAQSELL NITITPESGE IPIQTVYTSS GWDSYSWAFK AKHSVVLFIV HNPGVSDDEA CGPLIDSFAI KTLNPPQRTK
201: GNMLKNGGFE EGPYIFPNTS WGVLVPPMDE DDYSPLSPWT ILSTTKSVKY IDAAHYAVPG GARAVELVSG METAMLQEVS TVPGRSYRLE FSVGDAGDGC
301: SGSLTVQAYA SRGSVKVTYQ SQGTGGYKRG LLEFTATEKR TRVVFVSMAY TTKSDGTLCG PVIDDASLVS VHSHRRFLL

Best Arabidopsis Sequence Match ( AT5G25460.1 )
(BLAST)

001: MEGVTVVSFF LLFIATAMAA KSTVSFRDGM LPNGDFELGP KPSDMKGTEI LNKLAIPNWE VTGFVEYIKS GHKQGDMLLV VPAGKFAVRL GNEASIKQRL
101: KVVKGMYYSL TFSAARTCAQ DERLNISVAP DSGVIPIQTV YSSSGWDLYA WAFQAESDVA EVVIHNPGVE EDPACGPLID GVAMRSLYPP RPTNKNILKN
201: GGFEEGPLVL PGSTTGVLIP PFIEDDHSPL PGWMVESLKA VKYVDVEHFS VPQGRRAIEL VAGKESAIAQ VVRTVIGKTY VLSFAVGDAN NACKGSMVVE
301: AFAGKDTLKV PYESKGTGGF KRASIRFVAV STRSRIMFYS TFYAMRSDDF SSLCGPVIDD VKLISVRKP

Arabidopsis Description

At5g25460 [Source:UniProtKB/TrEMBL;Acc:Q94F20]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.