CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 7
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05109	Soybean	nucleus	98.09	98.09
VIT_04s0008g05010.t01	Wine grape	extracellular, golgi	80.87	80.43
Bra023324.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	71.86	77.35
KRH52488	Soybean	extracellular	75.41	75.62
CDX85713	Canola	extracellular	75.14	75.14
CDY54909	Canola	cytoskeleton, cytosol, peroxisome	69.4	74.93
CDX91217	Canola	extracellular	74.86	74.86
AT5G11420.1	Thale cress	extracellular, golgi, vacuole	74.59	74.59
KRH52489	Soybean	extracellular, golgi	74.59	73.78
AT4G32460.1	Thale cress	endoplasmic reticulum, golgi	73.22	73.42
CDX97108	Canola	golgi	73.22	73.22
CDX68849	Canola	golgi	72.68	72.88
CDX80511	Canola	extracellular	72.95	72.75
Bra009841.1-P	Field mustard	extracellular	72.95	72.75
CDX88180	Canola	extracellular	72.95	72.75
Bra011349.1-P	Field mustard	golgi	72.4	72.6
CDX75247	Canola	golgi	72.4	72.6
PGSC0003DMT400074806	Potato	extracellular	73.5	72.51
Solyc08g067030.2.1	Tomato	extracellular	73.5	72.51
AT5G25460.1	Thale cress	endoplasmic reticulum, extracellular	72.95	72.36
CDY19801	Canola	extracellular	72.4	71.62
CDY05493	Canola	extracellular	71.58	71.58
Bra020500.1-P	Field mustard	extracellular	71.58	71.58
GSMUA_Achr1P14570_001	Banana	extracellular	70.49	70.11
GSMUA_Achr2P08300_001	Banana	extracellular	69.13	68.56
KRH09784	Soybean	nucleus	69.67	68.18
KRH23537	Soybean	nucleus	69.67	68.18
GSMUA_Achr7P08400_001	Banana	endoplasmic reticulum, extracellular, vacuole	66.94	66.76
GSMUA_Achr2P17020_001	Banana	endoplasmic reticulum, vacuole	65.3	65.12
TraesCS7A01G453100.1	Wheat	golgi	64.48	63.78
TraesCS7B01G353600.2	Wheat	extracellular	64.21	63.51
HORVU6Hr1G037000.1	Barley	extracellular	64.75	63.37
TraesCS7D01G442500.1	Wheat	golgi	63.93	63.24
TraesCS6A01G177500.1	Wheat	extracellular	63.93	62.57
TraesCS6B01G207200.1	Wheat	extracellular	63.93	62.57
Os01t0611000-01	Rice	extracellular	63.66	62.47
OQU87155	Sorghum	golgi	63.11	61.6
KXG29757	Sorghum	golgi	62.57	61.56
TraesCS6D01G166800.1	Wheat	extracellular, golgi, vacuole	56.56	60.88
Os02t0205200-01	Rice	mitochondrion, nucleus, plastid	60.66	60.82
Zm00001d044455_P001	Maize	plasma membrane	62.3	59.84
KRH44408	Soybean	golgi	68.03	56.98
CDX80516	Canola	plastid	47.27	56.54
Os04t0494600-01	Rice	extracellular	57.92	56.23
Os04t0494950-01	Rice	extracellular, vacuole	57.1	56.18
Os04t0494900-01	Rice	extracellular	57.38	55.7
TraesCS2B01G455800.1	Wheat	golgi	55.74	54.69
Zm00001d003183_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	56.56	54.47
TraesCS2B01G369800.1	Wheat	extracellular	55.46	54.13
Zm00001d003186_P001	Maize	extracellular	56.01	54.09
TraesCS2D01G432500.1	Wheat	extracellular, golgi	54.92	53.89
Os04t0495000-00	Rice	extracellular, golgi, vacuole	54.92	53.89
EES11052	Sorghum	mitochondrion	55.74	53.83
HORVU2Hr1G085440.1	Barley	extracellular	55.46	53.7
TraesCS2A01G434700.1	Wheat	golgi	54.64	53.62
TraesCS2A01G351600.1	Wheat	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	55.19	53.58
TraesCS2D01G349800.1	Wheat	mitochondrion	55.19	53.58
OQU81862	Sorghum	cytosol, endoplasmic reticulum, golgi, mitochondrion	57.1	53.32
EES11054	Sorghum	extracellular, vacuole	54.92	53.17
EES11053	Sorghum	endoplasmic reticulum, extracellular, vacuole	54.37	52.79
KXG26630	Sorghum	extracellular	54.64	52.63
TraesCS2B01G369500.1	Wheat	cytosol	51.37	52.51
TraesCS5B01G390400.1	Wheat	plastid	43.99	52.44
TraesCS5D01G395400.1	Wheat	extracellular	53.83	52.12
TraesCS2D01G349900.1	Wheat	extracellular	51.64	51.78
TraesCS2A01G351700.1	Wheat	extracellular	51.64	51.78
TraesCS2B01G369900.1	Wheat	extracellular	51.64	51.78
KRH32968	Soybean	endoplasmic reticulum	51.91	51.77
TraesCS5A01G385400.1	Wheat	extracellular	53.28	51.72
KRH13974	Soybean	nucleus	51.64	51.5
TraesCS2D01G349700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	53.28	51.45
Zm00001d003184_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, peroxisome	50.27	51.25
TraesCS2A01G351400.1	Wheat	extracellular	52.73	51.19
TraesCS2B01G369700.1	Wheat	endoplasmic reticulum, golgi	53.01	51.19
HORVU5Hr1G094750.2	Barley	extracellular	53.83	51.04
TraesCS2D01G349500.1	Wheat	extracellular	52.19	50.66
HORVU2Hr1G085430.1	Barley	endoplasmic reticulum, golgi	51.91	50.26
TraesCS2A01G351500.1	Wheat	extracellular, golgi	51.91	50.13
KRH23881	Soybean	extracellular	47.54	49.29
KRH39918	Soybean	endoplasmic reticulum, extracellular, golgi	51.64	48.46
Os02t0527500-00	Rice	plastid	17.21	48.09
TraesCS2B01G440300.1	Wheat	extracellular	50.0	47.66
TraesCS2A01G421300.1	Wheat	extracellular	50.0	47.53
TraesCS2B01G369300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	48.63	46.97
TraesCS2A01G351200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	48.36	46.7
TraesCS2D01G349200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	47.81	46.17
Zm00001d003187_P002	Maize	endoplasmic reticulum, plasma membrane	48.91	45.09
KXG26629	Sorghum	golgi	50.82	44.93
KRH21062	Soybean	endoplasmic reticulum	46.72	43.51
HORVU2Hr1G085370.2	Barley	endoplasmic reticulum	44.81	43.16
Zm00001d025754_P001	Maize	golgi	48.09	43.14
KRH11195	Soybean	endoplasmic reticulum	46.17	43.0
HORVU2Hr1G085340.2	Barley	mitochondrion, plastid	53.01	38.8
Zm00001d015715_P001	Maize	plasma membrane	61.48	38.4
HORVU2Hr1G085520.2	Barley	extracellular	32.24	32.33
Os03t0328501-00	Rice	plastid	27.05	31.83
Zm00001d003185_P001	Maize	extracellular	54.37	28.76
Os04t0494800-01	Rice	extracellular	19.67	19.0
Os07t0132600-00	Rice	mitochondrion, nucleus, plastid	18.58	18.63

Protein Annotations

EMBL:ACUP02008753	EnsemblPlants:KRH16010	EnsemblPlantsGene:GLYMA_14G126200	EntrezGene:100776765	Gene3D:2.60.120.260	InterPro:DUF642
InterPro:Galactose-bd-like_sf	InterPro:IPR008979	PANTHER:PTHR31265	PANTHER:PTHR31265:SF3	PFAM:PF04862	ProteinID:KRH16010
ProteinID:KRH16010.1	SignalP:SignalP-noTM	SUPFAM:SSF49785	UniParc:UPI000233BDFE	UniProt:I1M9K9	MapMan:35.2

Description

hypothetical protein

Coordinates

chr14:-:20010320..20016420

Molecular Weight (calculated)

39877.2 Da

IEP (calculated)

7.874

GRAVY (calculated)

-0.014

Length

366 amino acids

Sequence
(BLAST)

001: MKGRFMFLSV LLCATFHVSF SITDGLVANG NFELGPKPSA LKGTVVIGGS HSIPEWEISG FVEYIKSGQK QGDMLLVVPE GAYAVRLGNE ASIKQRIKVI
101: KGMYYSITFM VARTCAQEER LNISVTPDWG VIPIQTLYTS SGWDPIAFGF KAENETVEML IHNPGKEEDP ACGPLVDSVA LRTLYPPRAT NQNILKNGGF
201: EEGPYVFPNS SWGVIIPPNI EDDHSPLPGW MVESLKAVKY IDSGHFSVPQ GKRAVELIAG KESAIAQVAR TIPGKTYVLS FSVGDASNSC EGSMIVEAFA
301: GKDTIKVPYE SKGKGGFKRA ALKFVAVTPR TRIMFLSTFY TMRSDDFSSL CGPVIDDVKL VSLRKP

Best Arabidopsis Sequence Match ( AT5G11420.1 )
(BLAST)

001: MKGGSLSFLF VLLIATITSV ICFSDGMLPN GDFELGPKPS DMKGTQVINK KAIPSWELSG FVEYIKSGQK QGDMLLVVPA GKFAIRLGNE ASIKQRLNVT
101: KGMYYSLTFS AARTCAQDER LNISVAPDSG VIPIQTVYSS SGWDLYAWAF QAESNVAEIV IHNPGEEEDP ACGPLIDGVA IKALYPPRPT NKNILKNGGF
201: EEGPYVLPNA TTGVLVPPFI EDDHSPLPAW MVESLKAIKY VDVEHFSVPQ GRRAVELVAG KESAIAQVAR TVVGKTYVLS FAVGDANNAC QGSMVVEAFA
301: GKDTLKVPYE SRGKGGFKRA SLRFVAVSTR TRVMFYSTFY SMRSDDFSSL CGPVIDDVKL LSARKP

Arabidopsis Description

Uncharacterized protein At5g11420 [Source:UniProtKB/TrEMBL;Acc:Q9LYE7]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.