CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, golgi, endoplasmic reticulum, mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
endoplasmic reticulum 1
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003183_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	84.69	87.37
Zm00001d003184_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, peroxisome	77.3	84.4
TraesCS2A01G351600.1	Wheat	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	70.66	73.47
Os04t0494950-01	Rice	extracellular, vacuole	68.62	72.31
TraesCS2B01G369800.1	Wheat	extracellular	69.13	72.27
EES11054	Sorghum	extracellular, vacuole	69.13	71.69
TraesCS2D01G349800.1	Wheat	mitochondrion	68.88	71.62
HORVU2Hr1G085440.1	Barley	extracellular	68.11	70.63
EES11053	Sorghum	endoplasmic reticulum, extracellular, vacuole	65.05	67.64
OQU87155	Sorghum	golgi	63.78	66.67
EES11052	Sorghum	mitochondrion	63.78	65.96
KXG26630	Sorghum	extracellular	61.99	63.95
GSMUA_Achr1P14570_001	Banana	extracellular	57.91	61.68
GSMUA_Achr2P08300_001	Banana	extracellular	57.91	61.52
CDY54909	Canola	cytoskeleton, cytosol, peroxisome	51.02	59.0
KXG29757	Sorghum	golgi	55.61	58.6
Bra023324.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	50.51	58.24
VIT_04s0008g05010.t01	Wine grape	extracellular, golgi	54.59	58.15
PGSC0003DMT400074806	Potato	extracellular	54.59	57.68
Solyc08g067030.2.1	Tomato	extracellular	54.34	57.41
Solyc06g067910.2.1	Tomato	nucleus	54.34	57.26
KRH05109	Soybean	nucleus	53.32	57.1
KRH16010	Soybean	nucleus	53.32	57.1
PGSC0003DMT400073388	Potato	mitochondrion	53.83	56.87
Bra020500.1-P	Field mustard	extracellular	53.06	56.83
CDY05493	Canola	extracellular	53.06	56.83
PGSC0003DMT400014547	Potato	extracellular	53.32	56.79
Bra009841.1-P	Field mustard	extracellular	53.06	56.68
CDX80511	Canola	extracellular	53.06	56.68
CDX88180	Canola	extracellular	53.06	56.68
Solyc03g120040.2.1	Tomato	extracellular, nucleus	37.24	56.59
AT5G11420.1	Thale cress	extracellular, golgi, vacuole	52.55	56.28
CDX91217	Canola	extracellular	52.55	56.28
CDY19801	Canola	extracellular	53.06	56.22
AT4G32460.1	Thale cress	endoplasmic reticulum, golgi	52.3	56.16
CDX85713	Canola	extracellular	52.3	56.01
PGSC0003DMT400073682	Potato	cytosol	47.7	55.82
CDX68849	Canola	golgi	51.79	55.62
Bra011349.1-P	Field mustard	golgi	51.53	55.34
CDX75247	Canola	golgi	51.53	55.34
AT5G25460.1	Thale cress	endoplasmic reticulum, extracellular	51.79	55.01
CDX97108	Canola	golgi	51.02	54.64
KRH09784	Soybean	nucleus	52.04	54.55
KRH23537	Soybean	nucleus	51.79	54.28
Solyc12g042930.1.1	Tomato	endoplasmic reticulum, golgi	52.55	54.21
VIT_09s0002g05930.t01	Wine grape	endoplasmic reticulum, extracellular	55.61	53.83
KRH52489	Soybean	extracellular, golgi	50.51	53.51
KRH52488	Soybean	extracellular	49.74	53.42
KXG26629	Sorghum	golgi	54.34	51.45
KRH44408	Soybean	golgi	49.74	44.62
EER93244	Sorghum	extracellular, vacuole	41.84	42.49
EES01494	Sorghum	plasma membrane	42.6	41.96
CDX80516	Canola	plastid	32.14	41.18

Protein Annotations

EnsemblPlants:OQU81862	EnsemblPlantsGene:SORBI_3006G133200	Gene3D:2.60.120.260	InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979
PANTHER:PTHR31265	PANTHER:PTHR31265:SF8	PFAM:PF04862	ProteinID:OQU81862	ProteinID:OQU81862.1	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF49785	TMHMM:TMhelix	UniParc:UPI000B423998	UniProt:A0A1Z5RDP7	MapMan:35.2

Description

hypothetical protein

Coordinates

chr6:+:49679786..49681972

Molecular Weight (calculated)

42225.3 Da

IEP (calculated)

7.882

GRAVY (calculated)

-0.134

Length

392 amino acids

Sequence
(BLAST)

001: MELMRREPQQ SSMAGRTRSR CPVLLLFLVG VAARVASGVV TDGLLPNGNF EFGPAKSDLN GTRVMGQNSI PNWEISGFVE YIGSGQQQDD MILPVPEGAY
101: AVRLGNDATI RQKLSVNRKT TYSITFCAAR TCAQAEQLNV SVAAESGVLP VQTVYTSSGW DSYSYAFRAR HSTAWLTIHN PSHEDDPACG PLIDSVAIKA
201: LNPPHHTKGN LLRNGDFEEG PFIFPGTAWG VLVPPMDEDD VSPLPGWMVM SDTKVVKYVD AAHHAVPRGA RAVELVAGRE AALVQEVRGT VPGRRYRLSF
301: SVGDAGNGCE GSLAVEAYAA RATARATYES RGTGGSIKRA AVVEFAAIAN LTRVVFQSYN HHMKPDGTLC GPVVDDVSLV GLRKHAARRL FL

Best Arabidopsis Sequence Match ( AT5G25460.1 )
(BLAST)

001: MEGVTVVSFF LLFIATAMAA KSTVSFRDGM LPNGDFELGP KPSDMKGTEI LNKLAIPNWE VTGFVEYIKS GHKQGDMLLV VPAGKFAVRL GNEASIKQRL
101: KVVKGMYYSL TFSAARTCAQ DERLNISVAP DSGVIPIQTV YSSSGWDLYA WAFQAESDVA EVVIHNPGVE EDPACGPLID GVAMRSLYPP RPTNKNILKN
201: GGFEEGPLVL PGSTTGVLIP PFIEDDHSPL PGWMVESLKA VKYVDVEHFS VPQGRRAIEL VAGKESAIAQ VVRTVIGKTY VLSFAVGDAN NACKGSMVVE
301: AFAGKDTLKV PYESKGTGGF KRASIRFVAV STRSRIMFYS TFYAMRSDDF SSLCGPVIDD VKLISVRKP

Arabidopsis Description

At5g25460 [Source:UniProtKB/TrEMBL;Acc:Q94F20]
SUBAcon: [extracellular,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.