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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 5
  • golgi 6
  • plasma membrane 5
  • endoplasmic reticulum 6
  • vacuole 6
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:golgi
 cytosol: 22313117
extracellular: 22313117
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc08g067030.2.1 Tomato extracellular 97.3 97.3
Bra023324.1-P Field mustard cytoskeleton, cytosol, peroxisome 69.27 75.59
VIT_04s0008g05010.t01 Wine grape extracellular, golgi 74.66 75.27
CDX85713 Canola extracellular 72.78 73.77
KRH16010 Soybean nucleus 72.51 73.5
KRH05109 Soybean nucleus 72.24 73.22
CDX91217 Canola extracellular 71.97 72.95
GSMUA_Achr1P14570_001 Banana extracellular 72.24 72.83
CDY54909 Canola cytoskeleton, cytosol, peroxisome 66.04 72.27
AT5G11420.1 Thale cress extracellular, golgi, vacuole 70.62 71.58
CDX97108 Canola golgi 70.08 71.04
GSMUA_Achr2P08300_001 Banana extracellular 70.35 70.73
CDX80511 Canola extracellular 69.0 69.75
Bra009841.1-P Field mustard extracellular 69.0 69.75
CDX88180 Canola extracellular 69.0 69.75
CDX75247 Canola golgi 67.92 69.04
Bra011349.1-P Field mustard golgi 67.92 69.04
GSMUA_Achr7P08400_001 Banana endoplasmic reticulum, extracellular, vacuole 68.19 68.94
CDY19801 Canola extracellular 68.73 68.92
CDY05493 Canola extracellular 67.92 68.85
Bra020500.1-P Field mustard extracellular 67.92 68.85
AT5G25460.1 Thale cress endoplasmic reticulum, extracellular 68.46 68.83
CDX68849 Canola golgi 67.39 68.49
AT4G32460.1 Thale cress endoplasmic reticulum, golgi 66.85 67.95
GSMUA_Achr2P17020_001 Banana endoplasmic reticulum, vacuole 66.31 67.03
KRH52488 Soybean extracellular 64.96 66.03
PGSC0003DMT400014547 Potato extracellular 64.96 65.49
KRH52489 Soybean extracellular, golgi 64.69 64.86
Os01t0611000-01 Rice extracellular 64.69 64.34
HORVU6Hr1G037000.1 Barley extracellular 64.15 63.64
TraesCS6B01G207200.1 Wheat extracellular 64.15 63.64
TraesCS6A01G177500.1 Wheat extracellular 63.88 63.37
PGSC0003DMT400073682 Potato cytosol 57.14 63.28
TraesCS7A01G453100.1 Wheat golgi 63.07 63.24
TraesCS7B01G353600.2 Wheat extracellular 63.07 63.24
KXG29757 Sorghum golgi 63.34 63.17
TraesCS7D01G442500.1 Wheat golgi 62.8 62.97
PGSC0003DMT400073388 Potato mitochondrion 62.8 62.8
Os02t0205200-01 Rice mitochondrion, nucleus, plastid 61.46 62.47
OQU87155 Sorghum golgi 62.8 62.13
TraesCS6D01G166800.1 Wheat extracellular, golgi, vacuole 56.33 61.47
Zm00001d044455_P001 Maize plasma membrane 62.53 60.89
Os04t0494600-01 Rice extracellular 60.11 59.15
Os04t0494900-01 Rice extracellular 59.3 58.36
Os04t0494950-01 Rice extracellular, vacuole 58.49 58.33
Zm00001d003186_P001 Maize extracellular 58.76 57.52
TraesCS2B01G369800.1 Wheat extracellular 57.68 57.07
TraesCS2D01G432500.1 Wheat extracellular, golgi 57.14 56.84
Os04t0495000-00 Rice extracellular, golgi, vacuole 56.87 56.57
TraesCS2A01G351600.1 Wheat endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 57.41 56.5
HORVU2Hr1G085440.1 Barley extracellular 57.41 56.35
Zm00001d003183_P001 Maize extracellular, mitochondrion, plasma membrane, plastid 57.68 56.32
TraesCS2B01G455800.1 Wheat golgi 56.6 56.3
EES11052 Sorghum mitochondrion 57.41 56.2
TraesCS2D01G349800.1 Wheat mitochondrion 56.87 55.97
TraesCS5B01G390400.1 Wheat plastid 46.09 55.7
TraesCS2A01G434700.1 Wheat golgi 55.8 55.5
TraesCS5D01G395400.1 Wheat extracellular 56.06 55.03
KXG26630 Sorghum extracellular 56.33 55.0
EES11053 Sorghum endoplasmic reticulum, extracellular, vacuole 55.53 54.64
OQU81862 Sorghum cytosol, endoplasmic reticulum, golgi, mitochondrion 57.68 54.59
TraesCS2B01G369500.1 Wheat cytosol 52.56 54.47
TraesCS5A01G385400.1 Wheat extracellular 54.99 54.11
EES11054 Sorghum extracellular, vacuole 54.99 53.97
CDX80516 Canola plastid 44.47 53.92
Zm00001d003184_P001 Maize endoplasmic reticulum, extracellular, mitochondrion, peroxisome 51.75 53.48
Os02t0527500-00 Rice plastid 18.87 53.44
TraesCS2A01G351400.1 Wheat extracellular 54.18 53.32
PGSC0003DMT400017671 Potato extracellular 52.56 53.13
TraesCS2D01G349500.1 Wheat extracellular 53.91 53.05
TraesCS2D01G349900.1 Wheat extracellular 52.02 52.88
HORVU5Hr1G094750.2 Barley extracellular 54.72 52.59
TraesCS2D01G349700.1 Wheat endoplasmic reticulum, golgi, mitochondrion 53.64 52.51
TraesCS2B01G369900.1 Wheat extracellular 51.21 52.05
TraesCS2B01G369700.1 Wheat endoplasmic reticulum, golgi 53.1 51.98
HORVU2Hr1G085430.1 Barley endoplasmic reticulum, golgi 52.83 51.85
TraesCS2A01G351700.1 Wheat extracellular 50.94 51.78
TraesCS2A01G351500.1 Wheat extracellular, golgi 52.56 51.45
TraesCS2B01G369300.1 Wheat endoplasmic reticulum, extracellular, vacuole 52.02 50.92
TraesCS2A01G351200.1 Wheat endoplasmic reticulum, extracellular, vacuole 51.75 50.66
TraesCS2D01G349200.1 Wheat endoplasmic reticulum, extracellular, vacuole 51.21 50.13
TraesCS2B01G440300.1 Wheat extracellular 50.94 49.22
TraesCS2A01G421300.1 Wheat extracellular 50.67 48.83
Zm00001d003187_P002 Maize endoplasmic reticulum, plasma membrane 52.02 48.61
PGSC0003DMT400054520 Potato endoplasmic reticulum, vacuole 49.87 47.31
KXG26629 Sorghum golgi 52.02 46.62
HORVU2Hr1G085370.2 Barley endoplasmic reticulum 47.44 46.32
Zm00001d025754_P001 Maize golgi 49.06 44.61
PGSC0003DMT400081713 Potato endoplasmic reticulum, extracellular, plasma membrane 23.72 42.93
HORVU2Hr1G085340.2 Barley mitochondrion, plastid 53.64 39.8
Zm00001d015715_P001 Maize plasma membrane 61.99 39.25
Os03t0328501-00 Rice plastid 28.03 33.44
HORVU2Hr1G085520.2 Barley extracellular 31.81 32.33
Zm00001d003185_P001 Maize extracellular 55.8 29.91
Os04t0494800-01 Rice extracellular 19.95 19.53
Os07t0132600-00 Rice mitochondrion, nucleus, plastid 17.52 17.81
Protein Annotations
EnsemblPlants:PGSC0003DMT400074806EnsemblPlantsGene:PGSC0003DMG400029086EntrezGene:102598357Gene3D:2.60.120.260InterPro:DUF642InterPro:Galactose-bd-like_sf
InterPro:IPR008979PANTHER:PTHR31265PANTHER:PTHR31265:SF3PFAM:PF04862PGSC:PGSC0003DMG400029086RefSeq:XP_006364278.1
SEG:segSignalP:SignalP-noTMSUPFAM:SSF49785TMHMM:TMhelixUniParc:UPI00029602C6UniProt:M1CU73
MapMan:35.2:::::
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029086]
Coordinates
chr8:+:40018570..40024310
Molecular Weight (calculated)
40769.0 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.017
Length
371 amino acids
Sequence
(BLAST)
001: MKSSTTVILL LVLLCAVSNI SFAVIDGLLK NGNFEIPPSK ADLNGTEVLK HNAIPEWSIS GFVEYIKAGQ KQGDMLLVVP EGYAAVRLGN EASIKQILNV
101: TKGMYYSLTF SAARTCAQEE RINVSVTPDF GVLPIQTLYS SSGWDSYAWA FQAELHQVEI LLHNPGVEED PACGPLIDSI AIRTLYPPRA TNQNLLKNGD
201: FEEGPYIFPN TSWGVLVPPN IEDDHSPLPA WMVESLKAVK YLDSDHFSVP HGKRAIELVA GKESAIAQVA RTTIGKMYQL SFKVGDASNA CEGSMIVEAF
301: AGRDTLKVPY ESMGKGGYKR AILRFKATAS RTRIMFLSTY YHTRSDDFVS LCGPVVDDVT LLSVRTHRRV L
Best Arabidopsis Sequence Match ( AT5G11420.1 )
(BLAST)
001: MKGGSLSFLF VLLIATITSV ICFSDGMLPN GDFELGPKPS DMKGTQVINK KAIPSWELSG FVEYIKSGQK QGDMLLVVPA GKFAIRLGNE ASIKQRLNVT
101: KGMYYSLTFS AARTCAQDER LNISVAPDSG VIPIQTVYSS SGWDLYAWAF QAESNVAEIV IHNPGEEEDP ACGPLIDGVA IKALYPPRPT NKNILKNGGF
201: EEGPYVLPNA TTGVLVPPFI EDDHSPLPAW MVESLKAIKY VDVEHFSVPQ GRRAVELVAG KESAIAQVAR TVVGKTYVLS FAVGDANNAC QGSMVVEAFA
301: GKDTLKVPYE SRGKGGFKRA SLRFVAVSTR TRVMFYSTFY SMRSDDFSSL CGPVIDDVKL LSARKP
Arabidopsis Description
Uncharacterized protein At5g11420 [Source:UniProtKB/TrEMBL;Acc:Q9LYE7]
SUBAcon: [extracellular,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.