Factsheet for TraesCS6A01G177500.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G207200.1	Wheat	extracellular	98.4	98.4
TraesCS6D01G166800.1	Wheat	extracellular, golgi, vacuole	89.3	98.24
HORVU6Hr1G037000.1	Barley	extracellular	97.86	97.86
KXG29757	Sorghum	golgi	86.1	86.56
Os02t0205200-01	Rice	mitochondrion, nucleus, plastid	82.62	84.66
GSMUA_Achr7P08400_001	Banana	endoplasmic reticulum, extracellular, vacuole	72.46	73.84
GSMUA_Achr2P17020_001	Banana	endoplasmic reticulum, vacuole	69.25	70.57
Os02t0527500-00	Rice	plastid	24.6	70.23
VIT_04s0008g05010.t01	Wine grape	extracellular, golgi	66.84	67.93
Bra023324.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	59.63	65.59
CDX68849	Canola	golgi	63.37	64.93
CDX75247	Canola	golgi	63.1	64.66
AT4G32460.1	Thale cress	endoplasmic reticulum, golgi	63.1	64.66
Bra011349.1-P	Field mustard	golgi	63.1	64.66
CDY54909	Canola	cytoskeleton, cytosol, peroxisome	58.56	64.6
KRH05109	Soybean	nucleus	62.83	64.21
KRH16010	Soybean	nucleus	62.57	63.93
PGSC0003DMT400074806	Potato	extracellular	63.37	63.88
Solyc08g067030.2.1	Tomato	extracellular	63.1	63.61
AT5G11420.1	Thale cress	extracellular, golgi, vacuole	61.5	62.84
CDX97108	Canola	golgi	61.23	62.57
CDX91217	Canola	extracellular	61.23	62.57
KRH52489	Soybean	extracellular, golgi	61.76	62.43
CDX85713	Canola	extracellular	60.96	62.3
TraesCS7A01G453100.1	Wheat	golgi	61.5	62.16
CDY19801	Canola	extracellular	61.5	62.16
CDX88180	Canola	extracellular	60.96	62.13
CDX80511	Canola	extracellular	60.96	62.13
Bra009841.1-P	Field mustard	extracellular	60.96	62.13
AT5G25460.1	Thale cress	endoplasmic reticulum, extracellular	61.23	62.06
CDY05493	Canola	extracellular	60.43	61.75
Bra020500.1-P	Field mustard	extracellular	60.43	61.75
KRH52488	Soybean	extracellular	59.36	60.82
Solyc06g067910.2.1	Tomato	nucleus	59.36	59.68
KRH23537	Soybean	nucleus	59.63	59.63
PGSC0003DMT400073388	Potato	mitochondrion	59.09	59.57
PGSC0003DMT400014547	Potato	extracellular	58.29	59.24
KRH09784	Soybean	nucleus	59.09	59.09
Solyc03g120040.2.1	Tomato	extracellular, nucleus	40.64	58.91
VIT_09s0002g05930.t01	Wine grape	endoplasmic reticulum, extracellular	62.83	58.02
PGSC0003DMT400073682	Potato	cytosol	51.34	57.31
Solyc12g042930.1.1	Tomato	endoplasmic reticulum, golgi	56.95	56.05
TraesCS2A01G351600.1	Wheat	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	56.15	55.7
TraesCS2A01G434700.1	Wheat	golgi	55.08	55.23
TraesCS5A01G385400.1	Wheat	extracellular	54.01	53.58
Zm00001d015715_P001	Maize	plasma membrane	83.16	53.07
TraesCS2A01G351500.1	Wheat	extracellular, golgi	53.74	53.03
TraesCS2A01G351700.1	Wheat	extracellular	51.34	52.6
TraesCS2A01G351400.1	Wheat	extracellular	52.41	51.99
KRH44408	Soybean	golgi	59.36	50.8
TraesCS2A01G351200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	51.34	50.66
TraesCS2A01G421300.1	Wheat	extracellular	51.34	49.87
CDX80516	Canola	plastid	40.64	49.67
TraesCS3A01G294300.1	Wheat	extracellular, golgi, plasma membrane	44.12	41.77
TraesCS5A01G458700.1	Wheat	extracellular, golgi	47.86	41.44

Protein Annotations

EnsemblPlants:TraesCS6A01G177500.1	EnsemblPlantsGene:TraesCS6A01G177500	Gene3D:2.60.120.260	InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979
PANTHER:PTHR31265	PANTHER:PTHR31265:SF3	PFAM:PF04862	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF49785
TMHMM:TMhelix	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:198178897..198180199

Molecular Weight (calculated)

40079.9 Da

IEP (calculated)

9.143

GRAVY (calculated)

-0.091

Length

374 amino acids

Sequence
(BLAST)

001: MARSAMSGLV LLLLCATCRL ALGITDGLLA NGNFERGPQP SQLRGTQVVG ASSIPSWRTS GFVEYIPSGR KQGDMVLVVP EGAYAVRLGN EASIAQRLRG
101: AVPGARYSLT FSAARTCAQA ERLNVSASGQ SGVLVMQTMY SSNGWDSYSW AWDATADEVE VVVHNPGVTE DPACGPLIDS VAIKTLTPPR RTNKNLVKNG
201: DFEEGPYIIP GTKWGVLIPS RMVDEHSPLP GWMVESLKAV KYIDSDHFAV PRGRRAVELL AGRESAIAQV IRTVPGKQYA LSFSVGDASN TCRGSLMVEA
301: YAGRESTKVP YESAGQGGAA KRAVLPFRAT SSRTRVVFFS SFYNTMTDDM SSLCGPVIDD VAVVSVRARP PKRP

Best Arabidopsis Sequence Match ( AT4G32460.1 )
(BLAST)

001: MKEMGVIVLL LLHSFFYVAF CFNDGLLPNG DFELGPRHSD MKGTQVINIT AIPNWELSGF VEYIPSGHKQ GDMILVVPKG AFAVRLGNEA SIKQKISVKK
101: GSYYSITFSA ARTCAQDERL NVSVAPHHAV MPIQTVYSSS GWDLYSWAFK AQSDYADIVI HNPGVEEDPA CGPLIDGVAM RALFPPRPTN KNILKNGGFE
201: EGPWVLPNIS SGVLIPPNSI DDHSPLPGWM VESLKAVKYI DSDHFSVPQG RRAVELVAGK ESAVAQVVRT IPGKTYVLSF SVGDASNACA GSMIVEAFAG
301: KDTIKVPYES KGKGGFKRSS LRFVAVSSRT RVMFYSTFYA MRNDDFSSLC GPVIDDVKLL SARRP

Arabidopsis Description

At4g32460 [Source:UniProtKB/TrEMBL;Acc:Q8LAR0]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.