Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54909 | Canola | cytoskeleton, cytosol, peroxisome | 85.37 | 92.92 |
| CDY19801 | Canola | extracellular | 92.95 | 92.7 |
| CDX88180 | Canola | extracellular | 91.6 | 92.1 |
| CDX80511 | Canola | extracellular | 91.6 | 92.1 |
| Bra009841.1-P | Field mustard | extracellular | 91.6 | 92.1 |
| CDY05493 | Canola | extracellular | 91.06 | 91.8 |
| Bra020500.1-P | Field mustard | extracellular | 91.06 | 91.8 |
| AT5G11420.1 | Thale cress | extracellular, golgi, vacuole | 85.64 | 86.34 |
| AT4G32460.1 | Thale cress | endoplasmic reticulum, golgi | 76.96 | 77.81 |
| VIT_04s0008g05010.t01 | Wine grape | extracellular, golgi | 75.61 | 75.82 |
| KRH16010 | Soybean | nucleus | 72.36 | 72.95 |
| KRH05109 | Soybean | nucleus | 72.09 | 72.68 |
| Solyc08g067030.2.1 | Tomato | extracellular | 68.83 | 68.46 |
| PGSC0003DMT400074806 | Potato | extracellular | 68.83 | 68.46 |
| KRH52488 | Soybean | extracellular | 66.94 | 67.67 |
| GSMUA_Achr7P08400_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 67.21 | 67.57 |
| GSMUA_Achr1P14570_001 | Banana | extracellular | 66.94 | 67.12 |
| CDX80516 | Canola | plastid | 55.56 | 66.99 |
| GSMUA_Achr2P08300_001 | Banana | extracellular | 66.67 | 66.67 |
| GSMUA_Achr2P17020_001 | Banana | endoplasmic reticulum, vacuole | 66.12 | 66.48 |
| KRH52489 | Soybean | extracellular, golgi | 66.4 | 66.22 |
| TraesCS7D01G442500.1 | Wheat | golgi | 63.41 | 63.24 |
| TraesCS7B01G353600.2 | Wheat | extracellular | 63.41 | 63.24 |
| Os01t0611000-01 | Rice | extracellular | 63.69 | 63.0 |
| TraesCS7A01G453100.1 | Wheat | golgi | 63.14 | 62.97 |
| AT1G80240.1 | Thale cress | endoplasmic reticulum | 62.06 | 61.89 |
| TraesCS6B01G207200.1 | Wheat | extracellular | 62.33 | 61.5 |
| HORVU6Hr1G037000.1 | Barley | extracellular | 62.33 | 61.5 |
| KXG29757 | Sorghum | golgi | 61.79 | 61.29 |
| TraesCS6A01G177500.1 | Wheat | extracellular | 62.06 | 61.23 |
| OQU87155 | Sorghum | golgi | 61.79 | 60.8 |
| Os02t0205200-01 | Rice | mitochondrion, nucleus, plastid | 59.89 | 60.55 |
| Zm00001d044455_P001 | Maize | plasma membrane | 61.25 | 59.32 |
| TraesCS6D01G166800.1 | Wheat | extracellular, golgi, vacuole | 53.93 | 58.53 |
| TraesCS2B01G455800.1 | Wheat | golgi | 56.64 | 56.03 |
| AT3G08030.1 | Thale cress | extracellular | 55.28 | 55.89 |
| Os02t0527500-00 | Rice | plastid | 19.78 | 55.73 |
| Os04t0494950-01 | Rice | extracellular, vacuole | 55.83 | 55.38 |
| TraesCS2D01G432500.1 | Wheat | extracellular, golgi | 55.83 | 55.23 |
| TraesCS2A01G434700.1 | Wheat | golgi | 55.01 | 54.42 |
| Os04t0494600-01 | Rice | extracellular | 55.56 | 54.38 |
| TraesCS2B01G369800.1 | Wheat | extracellular | 55.01 | 54.13 |
| HORVU2Hr1G085440.1 | Barley | extracellular | 54.74 | 53.44 |
| Zm00001d003183_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 55.01 | 53.42 |
| TraesCS2D01G349800.1 | Wheat | mitochondrion | 54.47 | 53.32 |
| TraesCS2A01G351600.1 | Wheat | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 54.47 | 53.32 |
| Os04t0495000-00 | Rice | extracellular, golgi, vacuole | 53.39 | 52.81 |
| TraesCS5B01G390400.1 | Wheat | plastid | 43.9 | 52.77 |
| Zm00001d003186_P001 | Maize | extracellular | 53.93 | 52.51 |
| TraesCS5D01G395400.1 | Wheat | extracellular | 53.66 | 52.38 |
| Os04t0494900-01 | Rice | extracellular | 53.39 | 52.25 |
| TraesCS2B01G369500.1 | Wheat | cytosol | 50.68 | 52.23 |
| AT2G41800.1 | Thale cress | extracellular, vacuole | 52.3 | 52.16 |
| TraesCS5A01G385400.1 | Wheat | extracellular | 53.12 | 51.99 |
| EES11053 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 53.12 | 51.99 |
| OQU81862 | Sorghum | cytosol, endoplasmic reticulum, golgi, mitochondrion | 55.01 | 51.79 |
| EES11052 | Sorghum | mitochondrion | 53.12 | 51.72 |
| Zm00001d003184_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, peroxisome | 50.14 | 51.53 |
| TraesCS2B01G369900.1 | Wheat | extracellular | 50.95 | 51.51 |
| TraesCS2D01G349900.1 | Wheat | extracellular | 50.95 | 51.51 |
| TraesCS2A01G351400.1 | Wheat | extracellular | 52.57 | 51.46 |
| AT2G41810.1 | Thale cress | extracellular, vacuole | 51.22 | 51.08 |
| TraesCS2A01G351700.1 | Wheat | extracellular | 50.41 | 50.96 |
| TraesCS2D01G349500.1 | Wheat | extracellular | 51.76 | 50.66 |
| TraesCS2B01G369700.1 | Wheat | endoplasmic reticulum, golgi | 52.03 | 50.66 |
| TraesCS2D01G349700.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 52.03 | 50.66 |
| KXG26630 | Sorghum | extracellular | 52.03 | 50.53 |
| HORVU5Hr1G094750.2 | Barley | extracellular | 52.85 | 50.52 |
| EES11054 | Sorghum | extracellular, vacuole | 51.49 | 50.26 |
| TraesCS2B01G440300.1 | Wheat | extracellular | 52.03 | 50.0 |
| HORVU2Hr1G085430.1 | Barley | endoplasmic reticulum, golgi | 50.95 | 49.74 |
| TraesCS2A01G421300.1 | Wheat | extracellular | 51.22 | 49.09 |
| TraesCS2A01G351500.1 | Wheat | extracellular, golgi | 50.41 | 49.08 |
| TraesCS2B01G369300.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 49.05 | 47.76 |
| TraesCS2A01G351200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 48.78 | 47.49 |
| TraesCS2D01G349200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 48.24 | 46.97 |
| KXG26629 | Sorghum | golgi | 49.59 | 44.2 |
| HORVU2Hr1G085370.2 | Barley | endoplasmic reticulum | 45.26 | 43.95 |
| Zm00001d003187_P002 | Maize | endoplasmic reticulum, plasma membrane | 47.15 | 43.83 |
| Zm00001d025754_P001 | Maize | golgi | 48.24 | 43.63 |
| AT2G34510.1 | Thale cress | vacuole | 46.61 | 42.89 |
| AT1G29980.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 46.07 | 41.77 |
| HORVU2Hr1G085340.2 | Barley | mitochondrion, plastid | 52.57 | 38.8 |
| Zm00001d015715_P001 | Maize | plasma membrane | 60.98 | 38.4 |
| HORVU2Hr1G085520.2 | Barley | extracellular | 31.71 | 32.05 |
| AT5G14150.2 | Thale cress | extracellular, plasma membrane, vacuole | 32.25 | 31.07 |
| Os03t0328501-00 | Rice | plastid | 24.93 | 29.58 |
| Zm00001d003185_P001 | Maize | extracellular | 54.2 | 28.9 |
| Os04t0494800-01 | Rice | extracellular | 18.7 | 18.21 |
| Os07t0132600-00 | Rice | mitochondrion, nucleus, plastid | 16.8 | 16.99 |
Protein Annotations
| Gene3D:2.60.120.260 | MapMan:35.2 | EntrezGene:832620 | UniProt:A0A178UH27 | ProteinID:AED93446.1 | EMBL:AF386962 |
| ArrayExpress:AT5G25460 | EnsemblPlantsGene:AT5G25460 | RefSeq:AT5G25460 | TAIR:AT5G25460 | RefSeq:AT5G25460-TAIR-G | EnsemblPlants:AT5G25460.1 |
| TAIR:AT5G25460.1 | Unigene:At.19291 | EMBL:BT008446 | InterPro:DUF642 | GO:GO:0005575 | GO:GO:0005618 |
| GO:GO:0005623 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009505 | GO:GO:0009506 | GO:GO:0009628 |
| GO:GO:0009653 | GO:GO:0010015 | GO:GO:0030312 | GO:GO:0080167 | InterPro:Galactose-bd-like_sf | InterPro:IPR008979 |
| RefSeq:NP_197928.1 | ProteinID:OAO92432.1 | PFAM:PF04862 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31265 | PANTHER:PTHR31265:SF23 | UniProt:Q94F20 |
| SUPFAM:SSF49785 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000A2D89 | : | : |
Description
At5g25460 [Source:UniProtKB/TrEMBL;Acc:Q94F20]
Coordinates
chr5:+:8863224..8865677
Molecular Weight (calculated)
39980.3 Da
IEP (calculated)
7.444
GRAVY (calculated)
0.050
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGVTVVSFF LLFIATAMAA KSTVSFRDGM LPNGDFELGP KPSDMKGTEI LNKLAIPNWE VTGFVEYIKS GHKQGDMLLV VPAGKFAVRL GNEASIKQRL
101: KVVKGMYYSL TFSAARTCAQ DERLNISVAP DSGVIPIQTV YSSSGWDLYA WAFQAESDVA EVVIHNPGVE EDPACGPLID GVAMRSLYPP RPTNKNILKN
201: GGFEEGPLVL PGSTTGVLIP PFIEDDHSPL PGWMVESLKA VKYVDVEHFS VPQGRRAIEL VAGKESAIAQ VVRTVIGKTY VLSFAVGDAN NACKGSMVVE
301: AFAGKDTLKV PYESKGTGGF KRASIRFVAV STRSRIMFYS TFYAMRSDDF SSLCGPVIDD VKLISVRKP
101: KVVKGMYYSL TFSAARTCAQ DERLNISVAP DSGVIPIQTV YSSSGWDLYA WAFQAESDVA EVVIHNPGVE EDPACGPLID GVAMRSLYPP RPTNKNILKN
201: GGFEEGPLVL PGSTTGVLIP PFIEDDHSPL PGWMVESLKA VKYVDVEHFS VPQGRRAIEL VAGKESAIAQ VVRTVIGKTY VLSFAVGDAN NACKGSMVVE
301: AFAGKDTLKV PYESKGTGGF KRASIRFVAV STRSRIMFYS TFYAMRSDDF SSLCGPVIDD VKLISVRKP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.