Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 7
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003558.1-P | Field mustard | extracellular | 89.46 | 89.7 |
| CDY57694 | Canola | extracellular | 89.46 | 89.46 |
| CDY54317 | Canola | endoplasmic reticulum | 88.92 | 88.92 |
| Bra035192.1-P | Field mustard | extracellular | 81.08 | 87.98 |
| CDY39990 | Canola | extracellular | 80.81 | 87.68 |
| CDX87297 | Canola | endoplasmic reticulum, extracellular | 80.54 | 87.13 |
| AT5G11420.1 | Thale cress | extracellular, golgi, vacuole | 62.7 | 63.39 |
| AT4G32460.1 | Thale cress | endoplasmic reticulum, golgi | 62.16 | 63.01 |
| AT5G25460.1 | Thale cress | endoplasmic reticulum, extracellular | 61.89 | 62.06 |
| AT3G08030.1 | Thale cress | extracellular | 50.54 | 51.23 |
| AT2G41800.1 | Thale cress | extracellular, vacuole | 49.19 | 49.19 |
| AT2G41810.1 | Thale cress | extracellular, vacuole | 49.19 | 49.19 |
| AT2G34510.1 | Thale cress | vacuole | 45.41 | 41.9 |
| AT1G29980.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 44.32 | 40.29 |
| AT5G14150.2 | Thale cress | extracellular, plasma membrane, vacuole | 29.73 | 28.72 |
Protein Annotations
| Gene3D:2.60.120.260 | MapMan:35.2 | EntrezGene:844364 | UniProt:A0A178WD80 | ProteinID:AAD55477.1 | ProteinID:AEE36374.1 |
| ArrayExpress:AT1G80240 | EnsemblPlantsGene:AT1G80240 | RefSeq:AT1G80240 | TAIR:AT1G80240 | RefSeq:AT1G80240-TAIR-G | EnsemblPlants:AT1G80240.1 |
| TAIR:AT1G80240.1 | EMBL:BT032869 | InterPro:DUF642 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 |
| GO:GO:0009505 | GO:GO:0030312 | InterPro:Galactose-bd-like_sf | InterPro:IPR008979 | RefSeq:NP_178141.1 | ProteinID:OAP14982.1 |
| PFAM:PF04862 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009030 | PANTHER:PTHR31265 | PANTHER:PTHR31265:SF9 |
| UniProt:Q9SSB7 | SUPFAM:SSF49785 | SignalP:SignalP-noTM | UniParc:UPI00000A77BB | SEG:seg | : |
Description
At1g80240 [Source:UniProtKB/TrEMBL;Acc:Q9SSB7]
Coordinates
chr1:-:30171357..30173109
Molecular Weight (calculated)
40228.5 Da
IEP (calculated)
8.571
GRAVY (calculated)
-0.017
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MMYQEAALLL ALLFISSNVV LSAPVRDGLL PNGNFELGPK PSQMKGSVVK ERTAVPNWNI IGFVEFIKSG QKQDDMVLVV PQGSSAVRLG NEASISQKIS
101: VLPGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPEIE IRFHNPGVEE HPACGPLIDA VAIKALFPPR FSGYNLIKNG
201: NFEEGPYVFP TAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFAV PEGHRAIELV GGKESAISQI VRTSLNKFYA LTFNVGDARD GCEGPMIVEA
301: FAGQGKVMVD YASKGKGGFR RGRLVFKAVS ARTRVTFLST FYHMKSDHSG SLCGPVIDDV RLVAVGKLRG
101: VLPGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPEIE IRFHNPGVEE HPACGPLIDA VAIKALFPPR FSGYNLIKNG
201: NFEEGPYVFP TAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFAV PEGHRAIELV GGKESAISQI VRTSLNKFYA LTFNVGDARD GCEGPMIVEA
301: FAGQGKVMVD YASKGKGGFR RGRLVFKAVS ARTRVTFLST FYHMKSDHSG SLCGPVIDDV RLVAVGKLRG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.