CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 5
endoplasmic reticulum 7
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57694	Canola	extracellular	97.84	97.84
CDY39990	Canola	extracellular	82.97	90.03
CDX87297	Canola	endoplasmic reticulum, extracellular	82.7	89.47
AT1G80240.1	Thale cress	endoplasmic reticulum	88.92	88.92
CDY54909	Canola	cytoskeleton, cytosol, peroxisome	58.11	63.42
CDX97108	Canola	golgi	62.7	63.39
CDX85713	Canola	extracellular	62.7	63.39
CDX91217	Canola	extracellular	62.43	63.11
CDX68849	Canola	golgi	60.27	61.1
CDY05493	Canola	extracellular	60.27	60.93
CDX80511	Canola	extracellular	60.27	60.76
CDX88180	Canola	extracellular	60.27	60.76
CDX75247	Canola	golgi	59.46	60.27
CDY19801	Canola	extracellular	60.27	60.27
CDX79913	Canola	cytosol	29.46	51.17
CDY28002	Canola	extracellular	50.27	50.96
CDY48764	Canola	cytosol	27.57	50.75
CDY35979	Canola	extracellular	50.0	50.68
CDY22149	Canola	extracellular	49.73	50.41
CDY14785	Canola	extracellular, vacuole	48.11	48.11
CDY06908	Canola	extracellular	47.3	46.79
CDX80516	Canola	plastid	37.57	45.42
CDY17255	Canola	plasma membrane	44.32	41.0
CDX84311	Canola	plasma membrane	44.32	41.0
CDY48765	Canola	extracellular	47.84	39.95
CDX79912	Canola	extracellular, vacuole	48.11	39.56
CDY26302	Canola	extracellular, golgi, plasma membrane	43.51	39.36
CDX99870	Canola	plasma membrane	39.73	37.69
CDX78563	Canola	extracellular, plasma membrane	29.19	28.05
CDX70545	Canola	extracellular, vacuole	28.65	27.75

Protein Annotations

EnsemblPlants:CDY54317	EnsemblPlantsGene:GSBRNA2T00013805001	InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979	PANTHER:PTHR31265
PANTHER:PTHR31265:SF9	PFAM:PF04862	ProteinID:CDY54317	ProteinID:CDY54317.1	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF49785	UniParc:UPI0004EE2D7A	UniProt:A0A078IWE6	MapMan:35.2	:	:

Description

BnaC06g43150DBnaC06g43150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWE6]

Coordinates

chrLK033301:-:39783..41285

Molecular Weight (calculated)

40104.1 Da

IEP (calculated)

8.209

GRAVY (calculated)

-0.074

Length

370 amino acids

Sequence
(BLAST)

001: MYQEAALLLA LLCVSSNVAV SAPIRDGSLL PNGNFEIGPK PSQLKGSVVK ERNAVAHWDM TGFVEYIKAG QKQDDMVLVV PEGSSAVRLG NEASISQKIS
101: VRSGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPQIV IRIHNPGHEE HPACGPLIDA VAIKALFPPR FSGYNLIKNG
201: NFEEGPYVFP TAKWGVLIPP FIEDDNSPLP GWIIESLKAV KYVDKAHFFV PEGHRAIELV GGKESAVSQI VRTSPNKFYA LTFNVGDARD ACEGPMAVEA
301: FAGRGNTLVD YMSKGKGGFK QGRLVFKAVS ARTRVTFLST FYHMKNDHSG SLCGPVVDDV RLVAVKTLPG

Best Arabidopsis Sequence Match ( AT1G80240.1 )
(BLAST)

001: MMYQEAALLL ALLFISSNVV LSAPVRDGLL PNGNFELGPK PSQMKGSVVK ERTAVPNWNI IGFVEFIKSG QKQDDMVLVV PQGSSAVRLG NEASISQKIS
101: VLPGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPEIE IRFHNPGVEE HPACGPLIDA VAIKALFPPR FSGYNLIKNG
201: NFEEGPYVFP TAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFAV PEGHRAIELV GGKESAISQI VRTSLNKFYA LTFNVGDARD GCEGPMIVEA
301: FAGQGKVMVD YASKGKGGFR RGRLVFKAVS ARTRVTFLST FYHMKSDHSG SLCGPVIDDV RLVAVGKLRG

Arabidopsis Description

At1g80240 [Source:UniProtKB/TrEMBL;Acc:Q9SSB7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.