Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06908 | Canola | extracellular | 93.24 | 92.25 |
| CDX79913 | Canola | cytosol | 51.35 | 89.2 |
| AT2G41800.1 | Thale cress | extracellular, vacuole | 87.57 | 87.57 |
| CDY48764 | Canola | cytosol | 47.03 | 86.57 |
| CDY48765 | Canola | extracellular | 80.27 | 67.04 |
| CDX79912 | Canola | extracellular, vacuole | 80.27 | 66.0 |
| VIT_08s0007g08460.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 63.78 | 64.31 |
| Solyc04g015610.2.1 | Tomato | extracellular | 58.38 | 58.54 |
| GSMUA_Achr9P25300_001 | Banana | extracellular, vacuole | 56.49 | 57.58 |
| PGSC0003DMT400081713 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 31.35 | 56.59 |
| Solyc04g015620.2.1 | Tomato | plastid | 56.49 | 56.49 |
| CDY28002 | Canola | extracellular | 55.14 | 55.89 |
| CDY35979 | Canola | extracellular | 54.86 | 55.62 |
| CDY22149 | Canola | extracellular | 54.86 | 55.62 |
| EER93244 | Sorghum | extracellular, vacuole | 55.68 | 53.37 |
| Os03t0807700-01 | Rice | plastid | 55.41 | 52.16 |
| CDX75247 | Canola | golgi | 51.08 | 51.78 |
| CDX91217 | Canola | extracellular | 51.08 | 51.64 |
| CDX85713 | Canola | extracellular | 51.08 | 51.64 |
| CDX68849 | Canola | golgi | 50.54 | 51.23 |
| CDX97108 | Canola | golgi | 50.54 | 51.09 |
| CDY54909 | Canola | cytoskeleton, cytosol, peroxisome | 46.76 | 51.03 |
| TraesCS5D01G469800.1 | Wheat | extracellular, vacuole | 54.59 | 50.88 |
| Zm00001d034547_P002 | Maize | extracellular, vacuole | 55.41 | 49.52 |
| CDX80511 | Canola | extracellular | 48.92 | 49.32 |
| CDX88180 | Canola | extracellular | 48.92 | 49.32 |
| CDY19801 | Canola | extracellular | 48.92 | 48.92 |
| CDY05493 | Canola | extracellular | 48.11 | 48.63 |
| CDY57694 | Canola | extracellular | 48.38 | 48.38 |
| HORVU5Hr1G109880.2 | Barley | golgi, vacuole | 54.32 | 48.2 |
| CDY54317 | Canola | endoplasmic reticulum | 48.11 | 48.11 |
| CDX87297 | Canola | endoplasmic reticulum, extracellular | 44.32 | 47.95 |
| GSMUA_Achr6P29630_001 | Banana | cytosol, plastid | 40.54 | 47.47 |
| CDY39990 | Canola | extracellular | 43.51 | 47.21 |
| TraesCS5A01G458700.1 | Wheat | extracellular, golgi | 54.59 | 46.76 |
| Os07t0206900-01 | Rice | cytosol, peroxisome | 11.08 | 41.84 |
| CDX80516 | Canola | plastid | 34.05 | 41.18 |
| CDY26302 | Canola | extracellular, golgi, plasma membrane | 40.27 | 36.43 |
| CDX84311 | Canola | plasma membrane | 38.92 | 36.0 |
| CDY17255 | Canola | plasma membrane | 38.92 | 36.0 |
| CDX99870 | Canola | plasma membrane | 36.49 | 34.62 |
| CDX70545 | Canola | extracellular, vacuole | 30.54 | 29.58 |
| CDX78563 | Canola | extracellular, plasma membrane | 30.54 | 29.35 |
Protein Annotations
| EnsemblPlants:CDY14785 | EnsemblPlantsGene:GSBRNA2T00084648001 | InterPro:DUF642 | InterPro:Galactose-bd-like_sf | InterPro:IPR008979 | PANTHER:PTHR31265 |
| PANTHER:PTHR31265:SF5 | PFAM:PF04862 | ProteinID:CDY14785 | ProteinID:CDY14785.1 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF49785 | UniParc:UPI0004EDFAF3 | UniProt:A0A078FK32 | MapMan:35.2 | : | : |
Description
BnaC04g47820DBnaC04g47820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FK32]
Coordinates
chrLK032047:-:370396..371896
Molecular Weight (calculated)
40522.1 Da
IEP (calculated)
9.636
GRAVY (calculated)
0.012
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLYHSLCFL LLLSLCHGSH SARPRRTPHL DGLLPNGNFE HTPLKSNMKS RQIIGRNSLP HWQISGHVEL VSGGPQPGGF YFPVPRGVHA VRLGSLASIS
101: QYVRVKRGLV YSLTFGATRS CAQDENIKVS VPGQANELPI QTVFSSDGGD TYAWAFKAMS DVVKVTFHYP GVQEDRTCGP LVDVVAIKEI LPLLYNRGNL
201: VKNGGFEIGP HAFANYSTGI LIPARIQDII SPLPGWIIES LKPVKYIDKR HFKVPFGLSA VELVAGRESA IAQIIRTVAG KAYMLSFTVG DAQNGCHGSM
301: MVEAFVGKEP FKLPLVSEGK GAYKTGHFRF VADSNRTRLT FYSAFYHTKL HDFGHLCGPV LDSVIVLPAH
101: QYVRVKRGLV YSLTFGATRS CAQDENIKVS VPGQANELPI QTVFSSDGGD TYAWAFKAMS DVVKVTFHYP GVQEDRTCGP LVDVVAIKEI LPLLYNRGNL
201: VKNGGFEIGP HAFANYSTGI LIPARIQDII SPLPGWIIES LKPVKYIDKR HFKVPFGLSA VELVAGRESA IAQIIRTVAG KAYMLSFTVG DAQNGCHGSM
301: MVEAFVGKEP FKLPLVSEGK GAYKTGHFRF VADSNRTRLT FYSAFYHTKL HDFGHLCGPV LDSVIVLPAH
001: MSLYHSLSIF LLLSLCHGSY SLQPRRVPHL DGILPNGNFE ITPLKSNMKG RQIIGANSLP HWEIAGHVEL VSGGPQPGGF YFPVPRGVHA VRLGNLGTIS
101: QNVRVKSGLV YSLTFGATRT CAQDENIKVS VPGQANELPL QTVFSSDGGD TYAWAFKATS DVVKVTFHNP GVQEDRTCGP LLDVVAIKEI LPLRYTRGNL
201: VKNGGFEIGP HVFANFSTGI LIPARIQDFI SPLPGWIVES LKPVKYIDRR HFKVPYGQGA VELVAGRESA IAQIIRTIAG KAYMLSFAVG DAQNGCHGSM
301: MVEAFAGREP FKLSFMSEGK GAFKTGHFRF VADSDRTRLT FYSAFYHTKL HDFGHLCGPV LDSVVVTLAR
101: QNVRVKSGLV YSLTFGATRT CAQDENIKVS VPGQANELPL QTVFSSDGGD TYAWAFKATS DVVKVTFHNP GVQEDRTCGP LLDVVAIKEI LPLRYTRGNL
201: VKNGGFEIGP HVFANFSTGI LIPARIQDFI SPLPGWIVES LKPVKYIDRR HFKVPYGQGA VELVAGRESA IAQIIRTIAG KAYMLSFAVG DAQNGCHGSM
301: MVEAFAGREP FKLSFMSEGK GAFKTGHFRF VADSDRTRLT FYSAFYHTKL HDFGHLCGPV LDSVVVTLAR
Arabidopsis Description
At2g41800/T11A7.10 [Source:UniProtKB/TrEMBL;Acc:O22940]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.