CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78563	Canola	extracellular, plasma membrane	95.81	95.06
AT5G14150.2	Thale cress	extracellular, plasma membrane, vacuole	85.34	85.12
VIT_14s0068g02080.t01	Wine grape	extracellular, plasma membrane, vacuole	56.02	53.9
GSMUA_Achr6P12280_001	Banana	cytosol, peroxisome, plasma membrane	21.47	39.23
CDY48764	Canola	cytosol	18.85	35.82
CDX79913	Canola	cytosol	19.11	34.27
CDY54909	Canola	cytoskeleton, cytosol, peroxisome	29.32	33.04
CDX91217	Canola	extracellular	30.37	31.69
CDY05493	Canola	extracellular	30.37	31.69
CDX80511	Canola	extracellular	29.84	31.06
CDX88180	Canola	extracellular	29.84	31.06
CDX85713	Canola	extracellular	29.58	30.87
CDY19801	Canola	extracellular	29.58	30.54
CDY14785	Canola	extracellular, vacuole	29.58	30.54
CDY35979	Canola	extracellular	28.8	30.14
CDX97108	Canola	golgi	28.8	30.05
CDY06908	Canola	extracellular	29.32	29.95
CDY28002	Canola	extracellular	28.53	29.86
CDX75247	Canola	golgi	28.53	29.86
CDX68849	Canola	golgi	28.53	29.86
CDY22149	Canola	extracellular	28.27	29.59
CDY17255	Canola	plasma membrane	30.1	28.75
CDX84311	Canola	plasma membrane	30.1	28.75
CDY54317	Canola	endoplasmic reticulum	27.75	28.65
CDY39990	Canola	extracellular	25.39	28.45
CDY57694	Canola	extracellular	27.49	28.38
CDX87297	Canola	endoplasmic reticulum, extracellular	25.13	28.07
CDY26302	Canola	extracellular, golgi, plasma membrane	29.06	27.14
CDX99870	Canola	plasma membrane	27.23	26.67
CDX80516	Canola	plastid	20.68	25.82
CDY48765	Canola	extracellular	29.32	25.28
CDX79912	Canola	extracellular, vacuole	29.06	24.67

Protein Annotations

EnsemblPlants:CDX70545	EnsemblPlantsGene:GSBRNA2T00140382001	InterPro:DUF642	PANTHER:PTHR31265	PANTHER:PTHR31265:SF4	PFAM:PF04862
ProteinID:CDX70545	ProteinID:CDX70545.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EED1F9	MapMan:35.2

Description

BnaC03g06290D

Coordinates

chrLK031791:-:966564..967919

Molecular Weight (calculated)

40708.7 Da

IEP (calculated)

4.021

GRAVY (calculated)

0.101

Length

382 amino acids

Sequence
(BLAST)

001: MAIWFHRIFL LLLVSSCASS DFLENPDFES PPLNLSSNGA FVLLDQNTTL PGWTFQGTVQ YVTSPDLPDS GHAVQLGEDG KINQTFIARG DDLNYILTFA
101: LIPGGENCSS SSGLSVSGPD SNAVFSYRQN YSKVPWQSYS HNLGKWGNSE PLNLVLESQT IDSESNSTCW PIVDTLLIKT VGVTLDQDSG NLLTNGGFES
201: GPGFLPNSTE GVLIDAVPSL IQSALTQWSV IGTVRYIDSE HFHVPEGKAA IEILADTTPS GIQTATTDTS EGSRYNLTFT LGDANDACIG NFLVGVEAGS
301: AAQNFTLQSN GTGSGEKFGL VFVADKAAAQ ISFTSYSVTI TKEDVLCGPV IDEVIVHPLS GTASLKPTWL LLVFALLYVA VL

Best Arabidopsis Sequence Match ( AT5G14150.2 )
(BLAST)

001: MAIWFQRIFL LLLVSCCASS DFLENPDFES PPLNLPTNSN ASSVSLDQNS TLPGWTFQGT VLYVELPDTG HAVQLGEDGK INQTFIAKGD ELNYILTFAL
101: IHAGQNCTSS AGLSVSGPDS NAVFSYRQNY SKVSWQSYSH NLGSWGNGEP INLVLESQAI DSDSDTNSTC WPIIDTLLIK TVGVTLVQDS GNLLINGGFE
201: SGPGFLPNST DGVLIDAVPS LIQSPLRQWS VIGTVRYIDS EHFHVPEGKA AIEILSNTAP SGIQTATKGT SEGSRYNLTF TLGDANDACR GHFVVGAQAG
301: SVTQNFTLES NGTGSGEKFG LVFEADKDAA QISFTSYSVT MTKENVVCGP VIDEVMVHPL GGTASVKPTW LLLIFALLYV AVL

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FMT6]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.