CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006241.1-P	Field mustard	extracellular, plasma membrane	100.0	100.0
CDX70545	Canola	extracellular, vacuole	95.06	95.81
AT5G14150.2	Thale cress	extracellular, plasma membrane, vacuole	85.71	86.16
VIT_14s0068g02080.t01	Wine grape	extracellular, plasma membrane, vacuole	55.58	53.9
GSMUA_Achr6P12280_001	Banana	cytosol, peroxisome, plasma membrane	21.3	39.23
CDY48764	Canola	cytosol	18.7	35.82
CDX79913	Canola	cytosol	19.22	34.74
CDY54909	Canola	cytoskeleton, cytosol, peroxisome	30.39	34.51
CDY05493	Canola	extracellular	31.43	33.06
CDX80511	Canola	extracellular	30.91	32.43
CDX88180	Canola	extracellular	30.91	32.43
CDX91217	Canola	extracellular	30.65	32.24
CDX85713	Canola	extracellular	30.39	31.97
CDY19801	Canola	extracellular	30.65	31.89
CDX68849	Canola	golgi	29.35	30.96
CDX75247	Canola	golgi	29.35	30.96
CDX97108	Canola	golgi	29.35	30.87
CDY14785	Canola	extracellular, vacuole	29.35	30.54
CDY35979	Canola	extracellular	28.83	30.41
CDY28002	Canola	extracellular	28.57	30.14
CDY06908	Canola	extracellular	29.09	29.95
CDY22149	Canola	extracellular	28.31	29.86
CDY17255	Canola	plasma membrane	30.65	29.5
CDX84311	Canola	plasma membrane	30.39	29.25
CDY54317	Canola	endoplasmic reticulum	28.05	29.19
CDY39990	Canola	extracellular	25.71	29.03
CDY57694	Canola	extracellular	27.79	28.92
CDX87297	Canola	endoplasmic reticulum, extracellular	25.45	28.66
CDY26302	Canola	extracellular, golgi, plasma membrane	29.61	27.87
CDX99870	Canola	plasma membrane	27.53	27.18
CDX80516	Canola	plastid	21.3	26.8
CDY48765	Canola	extracellular	29.35	25.51
CDX79912	Canola	extracellular, vacuole	29.09	24.89

Protein Annotations

EnsemblPlants:CDX78563	EnsemblPlantsGene:GSBRNA2T00129973001	InterPro:DUF642	PANTHER:PTHR31265	PANTHER:PTHR31265:SF4	PFAM:PF04862
ProteinID:CDX78563	ProteinID:CDX78563.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000253FB40	MapMan:35.2

Description

BnaA03g04750D

Coordinates

chrLK031815:-:1320019..1321415

Molecular Weight (calculated)

40904.9 Da

IEP (calculated)

4.083

GRAVY (calculated)

0.087

Length

385 amino acids

Sequence
(BLAST)

001: MAIWFHRTFL LLLVSSCASS DFLENPDFES PPLNLSSNAS SGAFVLLDQN TTLPGWTFQG TVQYVTSPDL PDSGHAVQLG EDGKINQTFI AKGDDLNYIL
101: TFALIPGGEN CSSSSGLSVS GPDSNSVFSY KQNYSKVPWQ SYSHNLGKWG NGEPINLVLE SQAIDSDTNS TCWPIVDTLL IKTVGVTLDQ DSANLLTNGG
201: FESGPGFLPN STEGVLIDAV PSLIQSALTQ WSVIGTVRYI DSEHFHVPEG KAAIEILADT TPSGIQTATR DTSEGSRYNL TFTLGDANDA CIGHFVVGVE
301: AGSAAQNFTL ESNGTGSGEK FGLVFVADKA AAQISFTSYS VTMTKEDVLC GPVIDEVIVH PLSGTASLKP TWLLLVLALL YVAVL

Best Arabidopsis Sequence Match ( AT5G14150.2 )
(BLAST)

001: MAIWFQRIFL LLLVSCCASS DFLENPDFES PPLNLPTNSN ASSVSLDQNS TLPGWTFQGT VLYVELPDTG HAVQLGEDGK INQTFIAKGD ELNYILTFAL
101: IHAGQNCTSS AGLSVSGPDS NAVFSYRQNY SKVSWQSYSH NLGSWGNGEP INLVLESQAI DSDSDTNSTC WPIIDTLLIK TVGVTLVQDS GNLLINGGFE
201: SGPGFLPNST DGVLIDAVPS LIQSPLRQWS VIGTVRYIDS EHFHVPEGKA AIEILSNTAP SGIQTATKGT SEGSRYNLTF TLGDANDACR GHFVVGAQAG
301: SVTQNFTLES NGTGSGEKFG LVFEADKDAA QISFTSYSVT MTKENVVCGP VIDEVMVHPL GGTASVKPTW LLLIFALLYV AVL

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FMT6]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.