CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035192.1-P	Field mustard	extracellular	99.12	99.41
CDY39990	Canola	extracellular	96.49	96.77
CDY57694	Canola	extracellular	90.06	83.24
CDY54317	Canola	endoplasmic reticulum	89.47	82.7
AT1G80240.1	Thale cress	endoplasmic reticulum	87.13	80.54
CDY54909	Canola	cytoskeleton, cytosol, peroxisome	59.65	60.18
CDX97108	Canola	golgi	63.16	59.02
CDX85713	Canola	extracellular	62.57	58.47
CDX91217	Canola	extracellular	62.28	58.2
CDX80511	Canola	extracellular	62.28	58.04
CDX88180	Canola	extracellular	62.28	58.04
CDY05493	Canola	extracellular	61.99	57.92
CDY19801	Canola	extracellular	62.28	57.57
CDX68849	Canola	golgi	60.82	56.99
CDX75247	Canola	golgi	60.23	56.44
CDY22149	Canola	extracellular	50.0	46.85
CDY28002	Canola	extracellular	50.0	46.85
CDY35979	Canola	extracellular	49.71	46.58
CDY14785	Canola	extracellular, vacuole	47.95	44.32
CDX79913	Canola	cytosol	27.49	44.13
CDY48764	Canola	cytosol	25.44	43.28
CDY06908	Canola	extracellular	46.78	42.78
CDX80516	Canola	plastid	36.84	41.18
CDX84311	Canola	plasma membrane	45.61	39.0
CDY17255	Canola	plasma membrane	45.61	39.0
CDY26302	Canola	extracellular, golgi, plasma membrane	44.44	37.16
CDY48765	Canola	extracellular	47.08	36.34
CDX79912	Canola	extracellular, vacuole	47.37	36.0
CDX99870	Canola	plasma membrane	40.06	35.13
CDX78563	Canola	extracellular, plasma membrane	28.66	25.45
CDX70545	Canola	extracellular, vacuole	28.07	25.13

Protein Annotations

EnsemblPlants:CDX87297	EnsemblPlantsGene:GSBRNA2T00146261001	Gene3D:2.60.120.260	InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979
PANTHER:PTHR31265	PANTHER:PTHR31265:SF9	PFAM:PF04862	ProteinID:CDX87297	ProteinID:CDX87297.1	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF49785	TMHMM:TMhelix	UniParc:UPI0004EE0FFE	MapMan:35.2	:

Description

BnaA07g35760D

Coordinates

chrLK031850:-:66751..68029

Molecular Weight (calculated)

36954.4 Da

IEP (calculated)

6.628

GRAVY (calculated)

-0.039

Length

342 amino acids

Sequence
(BLAST)

001: MYQEVVLLLT LLCVSSSVVI SGPISDGSLL PNGNFEMGPK PSQLKGSVVK GRTAVPNWEI TGLVEYIKAG QKQDDMVLVV PEGSSAVRLG NEASISQKIS
101: VRSGRLYSVT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPEIE IRIHNPGREE HPACGPLIDA VAIKALFPPR FSGNNLIKNG
201: NFEEGPYVFA KAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFFV PEGHRAIELV GGKESAVSQI VRTTSLNKFY ALSFKVGDAR DACEGPMAVE
301: AFAGGRKILV DTFYHMKNDH SGSLCGPVID DVRLVAVRTV GG

Best Arabidopsis Sequence Match ( AT1G80240.1 )
(BLAST)

001: MMYQEAALLL ALLFISSNVV LSAPVRDGLL PNGNFELGPK PSQMKGSVVK ERTAVPNWNI IGFVEFIKSG QKQDDMVLVV PQGSSAVRLG NEASISQKIS
101: VLPGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPEIE IRFHNPGVEE HPACGPLIDA VAIKALFPPR FSGYNLIKNG
201: NFEEGPYVFP TAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFAV PEGHRAIELV GGKESAISQI VRTSLNKFYA LTFNVGDARD GCEGPMIVEA
301: FAGQGKVMVD YASKGKGGFR RGRLVFKAVS ARTRVTFLST FYHMKSDHSG SLCGPVIDDV RLVAVGKLRG

Arabidopsis Description

At1g80240 [Source:UniProtKB/TrEMBL;Acc:Q9SSB7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.