CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35979	Canola	extracellular	99.45	99.45
AT3G08030.1	Thale cress	extracellular	91.23	91.23
CDY22149	Canola	extracellular	90.68	90.68
VIT_13s0064g00460.t01	Wine grape	extracellular	70.96	71.94
Solyc01g087540.2.1	Tomato	extracellular	70.41	70.03
PGSC0003DMT400017671	Potato	extracellular	70.41	70.03
KRH32968	Soybean	endoplasmic reticulum	67.12	66.76
KRH13974	Soybean	nucleus	66.58	66.21
GSMUA_Achr9P25300_001	Banana	extracellular, vacuole	65.48	65.84
KRH23881	Soybean	extracellular	60.82	62.89
KRH39918	Soybean	endoplasmic reticulum, extracellular, golgi	64.93	60.77
CDX79913	Canola	cytosol	34.25	58.69
CDY54909	Canola	cytoskeleton, cytosol, peroxisome	53.42	57.52
EER93244	Sorghum	extracellular, vacuole	60.82	57.51
CDY48764	Canola	cytosol	31.51	57.21
CDX75247	Canola	golgi	55.34	55.34
CDX85713	Canola	extracellular	55.34	55.19
CDY14785	Canola	extracellular, vacuole	55.89	55.14
CDX88180	Canola	extracellular	55.34	55.04
CDX80511	Canola	extracellular	55.34	55.04
Os03t0807700-01	Rice	plastid	59.18	54.96
CDX91217	Canola	extracellular	55.07	54.92
CDY06908	Canola	extracellular	56.16	54.81
CDX68849	Canola	golgi	54.79	54.79
CDY19801	Canola	extracellular	55.34	54.59
CDY05493	Canola	extracellular	54.52	54.37
TraesCS5D01G469800.1	Wheat	extracellular, vacuole	58.36	53.65
CDX97108	Canola	golgi	53.7	53.55
Zm00001d034547_P002	Maize	extracellular, vacuole	60.55	53.38
GSMUA_Achr6P29630_001	Banana	cytosol, plastid	44.38	51.27
HORVU5Hr1G109880.2	Barley	golgi, vacuole	58.08	50.84
CDY54317	Canola	endoplasmic reticulum	50.96	50.27
CDY57694	Canola	extracellular	50.96	50.27
CDY39990	Canola	extracellular	46.85	50.15
CDX87297	Canola	endoplasmic reticulum, extracellular	46.85	50.0
TraesCS5A01G458700.1	Wheat	extracellular, golgi	58.36	49.31
CDY48765	Canola	extracellular	57.81	47.63
CDX79912	Canola	extracellular, vacuole	58.36	47.33
CDX80516	Canola	plastid	36.16	43.14
Os07t0206900-01	Rice	cytosol, peroxisome	11.23	41.84
CDX84311	Canola	plasma membrane	42.19	38.5
CDY17255	Canola	plasma membrane	42.19	38.5
CDY26302	Canola	extracellular, golgi, plasma membrane	43.01	38.39
CDX99870	Canola	plasma membrane	39.45	36.92
CDX78563	Canola	extracellular, plasma membrane	30.14	28.57
CDX70545	Canola	extracellular, vacuole	29.86	28.53

Protein Annotations

EnsemblPlants:CDY28002	EnsemblPlantsGene:GSBRNA2T00038928001	InterPro:DUF642	PANTHER:PTHR31265	PANTHER:PTHR31265:SF2	PFAM:PF04862
ProteinID:CDY28002	ProteinID:CDY28002.1	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00042D29F4
UniProt:A0A078GS81	MapMan:35.2	:	:	:	:

Description

BnaC05g44040DBnaC05g44040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GS81]

Coordinates

chrLK032213:-:160000..161614

Molecular Weight (calculated)

39093.5 Da

IEP (calculated)

9.234

GRAVY (calculated)

0.073

Length

365 amino acids

Sequence
(BLAST)

001: MAVSKAIVIP LLLVLCAAAL GAPAYEGFLR NGNFEESPKK TDMKKTVLLG KTALPEWVTT GFVEYIAGGP QPGGMYFPVA HGVHAVRLGN EAKISQKLKV
101: KPGSLYALTF GASRTCAQDE VLRVSVPPQS GDLPLQTLYN SFGGDVYAWA FVAKTSVVTV TFHNPGVQED PACGPLLDAV AIKELVHPMY TKGNLVKNGG
201: FEEGPHRLVN STQGVLLPPK QEDLTSPLPG WIIESLKAVK FIDSKYFNVP FGQAAIELVA GRESAIAQVI RTSPGQTYSL SFAVGDAKND CHGSMMVEAF
301: AARDTLKVPH TSVGGGHFKM ASFKFKAIGA RTRITFFSGY YHSKKMDMGS LCGPVIDQIV VSRVA

Best Arabidopsis Sequence Match ( AT3G08030.1 )
(BLAST)

001: MAVPKAIILP ILLLICGAAL GAPASEGYLR NGNFEESPKK TDMKKTVLLG KNALPEWETT GFVEYIAGGP QPGGMYFPVA HGVHAVRLGN EATISQKLEV
101: KPGSLYALTF GASRTCAQDE VLRVSVPSQS GDLPLQTLYN SFGGDVYAWA FVAKTSQVTV TFHNPGVQED PACGPLLDAV AIKELVHPIY TRGNLVKNGG
201: FEEGPHRLVN STQGVLLPPK QEDLTSPLPG WIIESLKAVK FIDSKYFNVP FGHAAIELVA GKESAIAQVI RTSPGQTYTL SFVVGDAKND CHGSMMVEAF
301: AARDTLKVPH TSVGGGHVKT ASFKFKAVEA RTRITFFSGF YHTKKTDTVS LCGPVIDEIV VSHVA

Arabidopsis Description

F17A17.37 protein [Source:UniProtKB/TrEMBL;Acc:Q9SFB1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.