Factsheet for PGSC0003DMT400017671

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g087540.2.1	Tomato	extracellular	98.64	98.64
VIT_13s0064g00460.t01	Wine grape	extracellular	79.84	81.39
KRH32968	Soybean	endoplasmic reticulum	75.48	75.48
KRH13974	Soybean	nucleus	74.39	74.39
Bra029693.1-P	Field mustard	extracellular	70.3	70.68
CDY35979	Canola	extracellular	70.3	70.68
CDY28002	Canola	extracellular	70.03	70.41
AT3G08030.1	Thale cress	extracellular	70.03	70.41
Bra040046.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	69.48	69.86
KRH23881	Soybean	extracellular	67.03	69.69
CDY22149	Canola	extracellular	69.21	69.59
GSMUA_Achr9P25300_001	Banana	extracellular, vacuole	67.3	68.04
KRH39918	Soybean	endoplasmic reticulum, extracellular, golgi	71.66	67.44
EER93244	Sorghum	extracellular, vacuole	62.4	59.33
Os03t0807700-01	Rice	plastid	61.31	57.25
PGSC0003DMT400081713	Potato	endoplasmic reticulum, extracellular, plasma membrane	31.88	57.07
TraesCS5D01G469800.1	Wheat	extracellular, vacuole	61.31	56.68
Zm00001d034547_P002	Maize	extracellular, vacuole	62.4	55.31
HORVU5Hr1G109880.2	Barley	golgi, vacuole	61.04	53.72
GSMUA_Achr6P29630_001	Banana	cytosol, plastid	45.5	52.85
PGSC0003DMT400074806	Potato	extracellular	53.13	52.56
TraesCS5A01G458700.1	Wheat	extracellular, golgi	61.31	52.08
PGSC0003DMT400073388	Potato	mitochondrion	51.77	51.21
PGSC0003DMT400014547	Potato	extracellular	50.68	50.54
PGSC0003DMT400073682	Potato	cytosol	45.5	49.85
PGSC0003DMT400054520	Potato	endoplasmic reticulum, vacuole	44.96	42.2
Os07t0206900-01	Rice	cytosol, peroxisome	10.9	40.82

Protein Annotations

EnsemblPlants:PGSC0003DMT400017671	EnsemblPlantsGene:PGSC0003DMG400006856	EntrezGene:102582371	Gene3D:2.60.120.260	InterPro:DUF642	InterPro:Galactose-bd-like_sf
InterPro:IPR008979	PANTHER:PTHR31265	PANTHER:PTHR31265:SF2	PFAM:PF04862	PGSC:PGSC0003DMG400006856	RefSeq:XP_006345424.1
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF49785	UniParc:UPI000296002D	UniProt:M1A997	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006856]

Coordinates

chr1:-:65424421..65426817

Molecular Weight (calculated)

39691.0 Da

IEP (calculated)

9.197

GRAVY (calculated)

0.017

Length

367 amino acids

Sequence
(BLAST)

001: MVLKVSVLLL FSFLFTASAV RSAPPLEGLL PNGNFEELPK PKDLKKKTVL QGKYALPKWE INGLVEYISG GPQPGGMYFA VAHGVHAVRL GNEASISQTI
101: PVKKGSLYAL TFGASRTCAQ EEVLRVSVPP QTGDLPLQTL YSSNGGDTYA WGFYATSNVV KVTFHNPGVQ EDPACGPLLD AVAIKELFPP RPTRVNLVKN
201: AGFEEGPHLL INSSHGVLLP PKQEDLTSPL PGWIIESLKA VKFLDSAHFN VPFGQAAVEL LAGRESALAQ IIRTVPKKVY AFTFSVGDAK NGCHGDMMVE
301: AFAAKETFKV PFKSQGKGSF KTVSFKFTAI ADRTRITFYS SFYHTKINDY GALCGPVVDE VKVTPVA

Best Arabidopsis Sequence Match ( AT3G08030.1 )
(BLAST)

001: MAVPKAIILP ILLLICGAAL GAPASEGYLR NGNFEESPKK TDMKKTVLLG KNALPEWETT GFVEYIAGGP QPGGMYFPVA HGVHAVRLGN EATISQKLEV
101: KPGSLYALTF GASRTCAQDE VLRVSVPSQS GDLPLQTLYN SFGGDVYAWA FVAKTSQVTV TFHNPGVQED PACGPLLDAV AIKELVHPIY TRGNLVKNGG
201: FEEGPHRLVN STQGVLLPPK QEDLTSPLPG WIIESLKAVK FIDSKYFNVP FGHAAIELVA GKESAIAQVI RTSPGQTYTL SFVVGDAKND CHGSMMVEAF
301: AARDTLKVPH TSVGGGHVKT ASFKFKAVEA RTRITFFSGF YHTKKTDTVS LCGPVIDEIV VSHVA

Arabidopsis Description

F17A17.37 protein [Source:UniProtKB/TrEMBL;Acc:Q9SFB1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.