Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g015620.2.1 | Tomato | plastid | 93.66 | 51.89 |
| VIT_08s0007g08460.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 63.41 | 35.42 |
| AT2G41810.1 | Thale cress | extracellular, vacuole | 60.0 | 33.24 |
| AT2G41800.1 | Thale cress | extracellular, vacuole | 57.56 | 31.89 |
| PGSC0003DMT400017671 | Potato | extracellular | 57.07 | 31.88 |
| Bra004651.1-P | Field mustard | extracellular | 57.07 | 31.62 |
| CDY14785 | Canola | extracellular, vacuole | 56.59 | 31.35 |
| GSMUA_Achr9P25300_001 | Banana | extracellular, vacuole | 54.63 | 30.85 |
| CDY06908 | Canola | extracellular | 56.1 | 30.75 |
| Bra016917.1-P | Field mustard | extracellular | 55.61 | 30.48 |
| Bra004650.1-P | Field mustard | extracellular | 53.17 | 29.38 |
| CDY48765 | Canola | extracellular | 56.59 | 26.19 |
| EER93244 | Sorghum | extracellular, vacuole | 49.27 | 26.17 |
| CDX79912 | Canola | extracellular, vacuole | 56.59 | 25.78 |
| Os03t0807700-01 | Rice | plastid | 46.83 | 24.43 |
| TraesCS5D01G469800.1 | Wheat | extracellular, vacuole | 46.83 | 24.18 |
| Zm00001d034547_P002 | Maize | extracellular, vacuole | 48.29 | 23.91 |
| PGSC0003DMT400074806 | Potato | extracellular | 42.93 | 23.72 |
| HORVU5Hr1G109880.2 | Barley | golgi, vacuole | 46.34 | 22.78 |
| PGSC0003DMT400014547 | Potato | extracellular | 40.0 | 22.28 |
| TraesCS5A01G458700.1 | Wheat | extracellular, golgi | 46.83 | 22.22 |
| PGSC0003DMT400054520 | Potato | endoplasmic reticulum, vacuole | 40.49 | 21.23 |
| GSMUA_Achr6P29630_001 | Banana | cytosol, plastid | 32.68 | 21.2 |
| PGSC0003DMT400073388 | Potato | mitochondrion | 37.07 | 20.49 |
| PGSC0003DMT400073682 | Potato | cytosol | 33.17 | 20.3 |
| CDX79913 | Canola | cytosol | 10.24 | 9.86 |
| CDY48764 | Canola | cytosol | 6.34 | 6.47 |
| Os07t0206900-01 | Rice | cytosol, peroxisome | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400081713 | EnsemblPlantsGene:PGSC0003DMG400032084 | EntrezGene:102603851 | Gene3D:2.60.120.260 | InterPro:DUF642 | InterPro:Galactose-bd-like_sf |
| InterPro:IPR008979 | PANTHER:PTHR31265 | PANTHER:PTHR31265:SF5 | PFAM:PF04862 | PGSC:PGSC0003DMG400032084 | RefSeq:XP_006368102.1 |
| SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF49785 | TMHMM:TMhelix | UniParc:UPI0002968792 | UniProt:M1D4Y4 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400032084]
Coordinates
chr00:-:41884952..41886355
Molecular Weight (calculated)
22133.2 Da
IEP (calculated)
4.487
GRAVY (calculated)
-0.033
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSIFSLSF VLIFSLYISL ASAATAPIVP YLDGLLENGD FEEGPKPSEL KKTVIIGKYS LPEWEISGVV EWVSGGPQEG GFYFPIPRGA HAIRLGNEAS
101: ISQYVEVKPN TAYSLTFGAT RTCAQDEVLT LSAGDTSSDL PIQTLYSADG GDTYAWAFKT TSNYVEVKFH NPGMQEDPAC GPILDHIAIK ELPMATYTKG
201: KPTIH
101: ISQYVEVKPN TAYSLTFGAT RTCAQDEVLT LSAGDTSSDL PIQTLYSADG GDTYAWAFKT TSNYVEVKFH NPGMQEDPAC GPILDHIAIK ELPMATYTKG
201: KPTIH
001: MSLYHSLSIF LLLSLCHGSY SLQPRRVPHL DGILPNGNFE ITPLKSNMKG RQIIGANSLP HWEIAGHVEL VSGGPQPGGF YFPVPRGVHA VRLGNLGTIS
101: QNVRVKSGLV YSLTFGATRT CAQDENIKVS VPGQANELPL QTVFSSDGGD TYAWAFKATS DVVKVTFHNP GVQEDRTCGP LLDVVAIKEI LPLRYTRGNL
201: VKNGGFEIGP HVFANFSTGI LIPARIQDFI SPLPGWIVES LKPVKYIDRR HFKVPYGQGA VELVAGRESA IAQIIRTIAG KAYMLSFAVG DAQNGCHGSM
301: MVEAFAGREP FKLSFMSEGK GAFKTGHFRF VADSDRTRLT FYSAFYHTKL HDFGHLCGPV LDSVVVTLAR
101: QNVRVKSGLV YSLTFGATRT CAQDENIKVS VPGQANELPL QTVFSSDGGD TYAWAFKATS DVVKVTFHNP GVQEDRTCGP LLDVVAIKEI LPLRYTRGNL
201: VKNGGFEIGP HVFANFSTGI LIPARIQDFI SPLPGWIVES LKPVKYIDRR HFKVPYGQGA VELVAGRESA IAQIIRTIAG KAYMLSFAVG DAQNGCHGSM
301: MVEAFAGREP FKLSFMSEGK GAFKTGHFRF VADSDRTRLT FYSAFYHTKL HDFGHLCGPV LDSVVVTLAR
Arabidopsis Description
At2g41800/T11A7.10 [Source:UniProtKB/TrEMBL;Acc:O22940]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.