Factsheet for Solyc04g015620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081713	Potato	endoplasmic reticulum, extracellular, plasma membrane	51.89	93.66
Solyc04g015610.2.1	Tomato	extracellular	84.86	85.09
VIT_08s0007g08460.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	65.41	65.94
Bra004651.1-P	Field mustard	extracellular	59.19	59.19
AT2G41810.1	Thale cress	extracellular, vacuole	58.65	58.65
CDX79913	Canola	cytosol	33.51	58.22
AT2G41800.1	Thale cress	extracellular, vacuole	57.57	57.57
Bra004650.1-P	Field mustard	extracellular	56.76	56.6
CDY14785	Canola	extracellular, vacuole	56.49	56.49
CDY48764	Canola	cytosol	30.54	56.22
Bra016917.1-P	Field mustard	extracellular	56.76	56.15
Solyc01g087540.2.1	Tomato	extracellular	55.68	56.13
CDY06908	Canola	extracellular	56.49	55.88
GSMUA_Achr9P25300_001	Banana	extracellular, vacuole	54.59	55.65
EER93244	Sorghum	extracellular, vacuole	51.08	48.96
CDY48765	Canola	extracellular	58.11	48.53
CDX79912	Canola	extracellular, vacuole	58.65	48.22
Solyc08g067030.2.1	Tomato	extracellular	47.84	47.71
TraesCS5D01G469800.1	Wheat	extracellular, vacuole	50.54	47.1
Os03t0807700-01	Rice	plastid	49.73	46.82
Zm00001d034547_P002	Maize	extracellular, vacuole	50.81	45.41
Solyc03g120040.2.1	Tomato	extracellular, nucleus	31.08	44.57
HORVU5Hr1G109880.2	Barley	golgi, vacuole	50.0	44.36
Solyc06g067910.2.1	Tomato	nucleus	44.32	44.09
Solyc12g042930.1.1	Tomato	endoplasmic reticulum, golgi	45.14	43.95
TraesCS5A01G458700.1	Wheat	extracellular, golgi	50.27	43.06
GSMUA_Achr6P29630_001	Banana	cytosol, plastid	36.76	43.04
Solyc02g070540.2.1	Tomato	endoplasmic reticulum, vacuole	41.89	39.64
Os07t0206900-01	Rice	cytosol, peroxisome	8.92	33.67

Protein Annotations

EnsemblPlants:Solyc04g015620.2.1	EnsemblPlantsGene:Solyc04g015620.2	Gene3D:2.60.120.260	InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979
PANTHER:PTHR31265	PANTHER:PTHR31265:SF5	PFAM:PF04862	SignalP:SignalP-noTM	SUPFAM:SSF49785	TMHMM:TMhelix
UniParc:UPI0002766BCE	UniProt:K4BQ64	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr4:+:5924562..5927065

Molecular Weight (calculated)

40323.1 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.068

Length

370 amino acids

Sequence
(BLAST)

001: MASSIFSLLI FTLYISLASA ATVPIVPYLD DLLENGDFEE GPKASELKKT VIIGKYSLPE WEISGVVEWV SGGPQEGGFY FPIPRGAHAI RLGNEASISQ
101: YVEVKPNTIY SLTFGATRTC AQDEVLTVSA GDMSSDLPIQ TLYSADGGDT YAWAFKTTSN YVEVKFHNPG MQEDPACGPL LDHIAIKELP MATYTKGNLV
201: KNGGFEAGPH VFKNFSTGVL VLPLKQDKYS PIPGWMVQFA KPAKYIDSKH FLVPSGNAAV ELIGGRETGI AQTVRTVPKQ FYNLTFIIGD ANNDCHGTMT
301: VQAFAGKAST QVSFVSSGKG WYKTASLKFQ ADKTRTTIAF YNPFYHTKVH DFGHMCGPVI DDVSLVHVKK

Best Arabidopsis Sequence Match ( AT2G41810.1 )
(BLAST)

001: MSLVLSLCLV FLCSLVHGSH SLPAQRTPHL DGLLPNGNFE QIPNKSNMRK RQIIGKYSLP HWEISGHVEL VSGGPQPGGF YFAVPRGVHA ARLGNLASIS
101: QYVKVKSGLV YSLTFGVTRT CAQDENIRIS VPGQTNELPI QTLFSTNGGD TYAWAFKATS DLVKVTFYNP GVQEDPTCGP IVDAVAIKEI LPLRYTKGNL
201: VKNGGFETGP HVFSNFSTGI LIPAKIQDLI SPLPGWIVES LKPVKYIDNR HFKVPSGLAA IELVAGRESA IAQIIRTVSG KNYILSFVVG DAHNGCHGSM
301: MVEAFAGISA FKVTFESNDK GAFKVGRFAF RADSNRTRIT FYSGFYHTKL HDFGHLCGPV LDNVSVFLAH

Arabidopsis Description

Uncharacterized protein At2g41810 [Source:UniProtKB/TrEMBL;Acc:O22939]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.