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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 2
  • cytosol 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX79913 Canola cytosol 90.55 85.45
Bra004650.1-P Field mustard extracellular 93.53 50.67
CDY14785 Canola extracellular, vacuole 86.57 47.03
AT2G41800.1 Thale cress extracellular, vacuole 86.07 46.76
CDY06908 Canola extracellular 83.58 44.92
Os07t0206900-01 Rice cytosol, peroxisome 19.4 39.8
VIT_08s0007g08460.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 65.67 35.97
CDX79912 Canola extracellular, vacuole 79.1 35.33
CDY48765 Canola extracellular 77.61 35.21
CDX80516 Canola plastid 49.75 32.68
Solyc04g015610.2.1 Tomato extracellular 59.2 32.25
GSMUA_Achr9P25300_001 Banana extracellular, vacuole 57.71 31.96
CDY54909 Canola cytoskeleton, cytosol, peroxisome 53.23 31.56
CDY28002 Canola extracellular 57.21 31.51
CDY22149 Canola extracellular 56.72 31.23
CDY35979 Canola extracellular 56.72 31.23
CDX97108 Canola golgi 56.22 30.87
CDX91217 Canola extracellular 56.22 30.87
CDX85713 Canola extracellular 55.72 30.6
EER93244 Sorghum extracellular, vacuole 58.71 30.57
Solyc04g015620.2.1 Tomato plastid 56.22 30.54
CDX75247 Canola golgi 54.73 30.14
Os03t0807700-01 Rice plastid 58.71 30.03
CDX68849 Canola golgi 54.23 29.86
CDX88180 Canola extracellular 53.73 29.43
CDX80511 Canola extracellular 53.73 29.43
CDY05493 Canola extracellular 53.23 29.23
TraesCS5D01G469800.1 Wheat extracellular, vacuole 57.71 29.22
CDY19801 Canola extracellular 53.73 29.19
Zm00001d034547_P002 Maize extracellular, vacuole 59.2 28.74
GSMUA_Achr6P29630_001 Banana cytosol, plastid 44.78 28.48
CDY57694 Canola extracellular 51.24 27.84
HORVU5Hr1G109880.2 Barley golgi, vacuole 57.71 27.82
CDY54317 Canola endoplasmic reticulum 50.75 27.57
TraesCS5A01G458700.1 Wheat extracellular, golgi 58.21 27.08
CDX87297 Canola endoplasmic reticulum, extracellular 43.28 25.44
CDY39990 Canola extracellular 41.79 24.63
CDY26302 Canola extracellular, golgi, plasma membrane 39.3 19.32
CDX84311 Canola plasma membrane 38.31 19.25
CDY17255 Canola plasma membrane 38.31 19.25
CDX99870 Canola plasma membrane 37.31 19.23
CDX70545 Canola extracellular, vacuole 35.82 18.85
CDX78563 Canola extracellular, plasma membrane 35.82 18.7
PGSC0003DMT400081713 Potato endoplasmic reticulum, extracellular, plasma membrane 6.47 6.34
Protein Annotations
EnsemblPlants:CDY48764EnsemblPlantsGene:GSBRNA2T00091671001InterPro:DUF642PANTHER:PTHR31265PANTHER:PTHR31265:SF5PFAM:PF04862
ProteinID:CDY48764ProteinID:CDY48764.1UniParc:UPI0004EDD331UniProt:A0A078IH86MapMan:35.2:
Description
BnaC04g02170DBnaC04g02170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IH86]
Coordinates
chrLK032790:-:41309..42104
Molecular Weight (calculated)
21924.6 Da
IEP (calculated)
9.035
GRAVY (calculated)
0.120
Length
201 amino acids
Sequence
(BLAST)
001: MVETLTLGLS RQYVVAIKEM LPLGYNRGGN LVKNGGFEIG PHVFANYSTG ILIPARIQDL ISPLPGWIVE SLKPVKYIDN RHFKVPSGLA AVELVAGRES
101: AIAQIIRTDA GKAYILSFTV GDAQNGCHGS MTVEAFAGKE PFKLSFVSEG KGVFKTGHFR FVADSDRTRL TFYSAFYHTK LHDFGHLCGP VLDSVVVLPT
201: H
Best Arabidopsis Sequence Match ( AT2G41800.1 )
(BLAST)
001: MSLYHSLSIF LLLSLCHGSY SLQPRRVPHL DGILPNGNFE ITPLKSNMKG RQIIGANSLP HWEIAGHVEL VSGGPQPGGF YFPVPRGVHA VRLGNLGTIS
101: QNVRVKSGLV YSLTFGATRT CAQDENIKVS VPGQANELPL QTVFSSDGGD TYAWAFKATS DVVKVTFHNP GVQEDRTCGP LLDVVAIKEI LPLRYTRGNL
201: VKNGGFEIGP HVFANFSTGI LIPARIQDFI SPLPGWIVES LKPVKYIDRR HFKVPYGQGA VELVAGRESA IAQIIRTIAG KAYMLSFAVG DAQNGCHGSM
301: MVEAFAGREP FKLSFMSEGK GAFKTGHFRF VADSDRTRLT FYSAFYHTKL HDFGHLCGPV LDSVVVTLAR
Arabidopsis Description
At2g41800/T11A7.10 [Source:UniProtKB/TrEMBL;Acc:O22940]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.