Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29980.1 | CDY46076 | AT2G23420.1 | 21798944 |
| AT1G29980.1 | CDY63965 | AT2G23420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26302 | Canola | extracellular, golgi, plasma membrane | 98.21 | 93.64 |
| AT1G29980.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 90.26 | 86.49 |
| CDX84311 | Canola | plasma membrane | 77.44 | 75.5 |
| CDY17255 | Canola | plasma membrane | 77.18 | 75.25 |
| KRH11195 | Soybean | endoplasmic reticulum | 71.79 | 71.25 |
| PGSC0003DMT400054520 | Potato | endoplasmic reticulum, vacuole | 70.26 | 70.08 |
| VIT_10s0003g03250.t01 | Wine grape | extracellular, golgi, plasma membrane | 70.26 | 69.9 |
| Solyc02g070540.2.1 | Tomato | endoplasmic reticulum, vacuole | 69.74 | 69.57 |
| KRH21062 | Soybean | endoplasmic reticulum | 70.0 | 69.47 |
| Os01t0531400-00 | Rice | cytosol | 46.41 | 65.58 |
| TraesCS3D01G294100.1 | Wheat | plasma membrane | 60.26 | 59.64 |
| GSMUA_Achr4P15090_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 57.69 | 59.37 |
| Os01t0756600-01 | Rice | plasma membrane | 60.51 | 59.15 |
| TraesCS3B01G328900.1 | Wheat | plasma membrane | 59.74 | 59.14 |
| TraesCS3A01G294300.1 | Wheat | extracellular, golgi, plasma membrane | 59.74 | 58.99 |
| EES01494 | Sorghum | plasma membrane | 59.23 | 58.04 |
| Zm00001d043414_P001 | Maize | plasma membrane | 58.97 | 57.93 |
| Zm00001d012718_P004 | Maize | endoplasmic reticulum, plasma membrane | 57.69 | 53.7 |
| GSMUA_Achr3P31400_001 | Banana | plasma membrane | 61.54 | 53.57 |
| HORVU3Hr1G072860.3 | Barley | plastid | 57.69 | 49.56 |
| CDX68849 | Canola | golgi | 41.03 | 43.84 |
| CDX75247 | Canola | golgi | 40.51 | 43.29 |
| CDX91217 | Canola | extracellular | 40.0 | 42.62 |
| CDY54909 | Canola | cytoskeleton, cytosol, peroxisome | 36.92 | 42.48 |
| CDX85713 | Canola | extracellular | 39.74 | 42.35 |
| CDX97108 | Canola | golgi | 38.97 | 41.53 |
| CDY05493 | Canola | extracellular | 38.72 | 41.26 |
| CDX80511 | Canola | extracellular | 38.72 | 41.14 |
| CDX88180 | Canola | extracellular | 38.72 | 41.14 |
| CDY19801 | Canola | extracellular | 38.72 | 40.81 |
| CDY39990 | Canola | extracellular | 35.38 | 40.47 |
| CDX79913 | Canola | cytosol | 22.05 | 40.38 |
| CDX87297 | Canola | endoplasmic reticulum, extracellular | 35.13 | 40.06 |
| CDY54317 | Canola | endoplasmic reticulum | 37.69 | 39.73 |
| CDY35979 | Canola | extracellular | 37.18 | 39.73 |
| CDY57694 | Canola | extracellular | 37.44 | 39.46 |
| CDY28002 | Canola | extracellular | 36.92 | 39.45 |
| CDY22149 | Canola | extracellular | 36.41 | 38.9 |
| CDY48764 | Canola | cytosol | 19.23 | 37.31 |
| CDY14785 | Canola | extracellular, vacuole | 34.62 | 36.49 |
| CDY06908 | Canola | extracellular | 33.85 | 35.29 |
| CDX80516 | Canola | plastid | 25.64 | 32.68 |
| CDY48765 | Canola | extracellular | 34.87 | 30.7 |
| CDX79912 | Canola | extracellular, vacuole | 35.13 | 30.44 |
| CDX78563 | Canola | extracellular, plasma membrane | 27.18 | 27.53 |
| CDX70545 | Canola | extracellular, vacuole | 26.67 | 27.23 |
Protein Annotations
| EnsemblPlants:CDX99870 | EnsemblPlantsGene:GSBRNA2T00108598001 | Gene3D:2.60.120.260 | GO:A0A078ECQ0 | InterPro:DUF642 | InterPro:Galactose-bd-like_sf |
| InterPro:IPR008979 | PANTHER:PTHR31265 | PANTHER:PTHR31265:SF1 | PFAM:PF04862 | ProteinID:CDX99870 | ProteinID:CDX99870.1 |
| SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EF28FA | MapMan:35.2 | : |
Description
BnaC05g22920D
Coordinates
chrLK031914:-:691889..694864
Molecular Weight (calculated)
42272.9 Da
IEP (calculated)
4.360
GRAVY (calculated)
-0.114
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPNNDRCKW SSIFMLLLSL SLAVSVAVAT DKAPLVEDGL VINGDFETSP SSGFPDDGAV DGPGEIPSWK SNGTVELINS GQKQGGMILI VPQGRHAVRL
101: GNDAEISQEL TLESINVSVA SVNANEGDTL ASRDVDLQTL YNVQGWDPYA WAFEAEEDHV RLVFKNPGME DDPTCGPIID DIAIKKLFTP EKPKDNAVIN
201: GDFEEGPWMF RNTSLGVLLP TNLDEETSSL PGWTVESNRA VRFVDSDHFS VPGGKRAVEL LSGKEGIISQ MVETKADKPY LLSFSLGHAG DKCKEPLAIM
301: TFAGDQAQNF HYMAQANSTF EKVGLNFTAK ADRTRVAFYS VYYNTRTDDM SSLCGPVIDD VRVWFAGSKK IGAGFGFGVS VFVLLVIGLV
101: GNDAEISQEL TLESINVSVA SVNANEGDTL ASRDVDLQTL YNVQGWDPYA WAFEAEEDHV RLVFKNPGME DDPTCGPIID DIAIKKLFTP EKPKDNAVIN
201: GDFEEGPWMF RNTSLGVLLP TNLDEETSSL PGWTVESNRA VRFVDSDHFS VPGGKRAVEL LSGKEGIISQ MVETKADKPY LLSFSLGHAG DKCKEPLAIM
301: TFAGDQAQNF HYMAQANSTF EKVGLNFTAK ADRTRVAFYS VYYNTRTDDM SSLCGPVIDD VRVWFAGSKK IGAGFGFGVS VFVLLVIGLV
001: MVPSNNRCKW SSIFLFLLSV SVAVLVAVAD DKSPAVEDGL VINGDFETSP SSGFPDDGVT DGPSDIPSWK SNGTVELINS GQKQGGMILI VPQGRHAVRL
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV
Arabidopsis Description
Uncharacterized protein T1P2.9 [Source:UniProtKB/TrEMBL;Acc:Q9C8S1]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.