CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY46076
CDY63965

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29980.1	CDY46076	AT2G23420.1	21798944
AT1G29980.1	CDY63965	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032349.1-P	Field mustard	extracellular, golgi, plasma membrane	99.02	99.02
CDX99870	Canola	plasma membrane	93.64	98.21
AT1G29980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	90.22	90.66
CDX84311	Canola	plasma membrane	77.51	79.25
CDY17255	Canola	plasma membrane	77.26	79.0
KRH11195	Soybean	endoplasmic reticulum	72.86	75.83
PGSC0003DMT400054520	Potato	endoplasmic reticulum, vacuole	71.64	74.94
VIT_10s0003g03250.t01	Wine grape	extracellular, golgi, plasma membrane	71.64	74.74
Solyc02g070540.2.1	Tomato	endoplasmic reticulum, vacuole	71.39	74.68
KRH21062	Soybean	endoplasmic reticulum	70.9	73.79
Os01t0531400-00	Rice	cytosol	45.72	67.75
TraesCS3D01G294100.1	Wheat	plasma membrane	62.1	64.47
TraesCS3B01G328900.1	Wheat	plasma membrane	61.61	63.96
Os01t0756600-01	Rice	plasma membrane	62.35	63.91
TraesCS3A01G294300.1	Wheat	extracellular, golgi, plasma membrane	61.61	63.8
GSMUA_Achr4P15090_001	Banana	cytosol, endoplasmic reticulum, peroxisome	58.68	63.32
EES01494	Sorghum	plasma membrane	61.12	62.81
Zm00001d043414_P001	Maize	plasma membrane	60.88	62.72
Zm00001d012718_P004	Maize	endoplasmic reticulum, plasma membrane	59.9	58.47
GSMUA_Achr3P31400_001	Banana	plasma membrane	63.08	57.59
HORVU3Hr1G072860.3	Barley	plastid	59.66	53.74
CDX68849	Canola	golgi	43.28	48.49
CDX75247	Canola	golgi	42.79	47.95
CDY54909	Canola	cytoskeleton, cytosol, peroxisome	38.88	46.9
CDX91217	Canola	extracellular	41.81	46.72
CDX85713	Canola	extracellular	41.56	46.45
CDX97108	Canola	golgi	40.83	45.63
CDY05493	Canola	extracellular	40.59	45.36
CDX80511	Canola	extracellular	40.59	45.23
CDX88180	Canola	extracellular	40.59	45.23
CDY39990	Canola	extracellular	37.41	44.87
CDY19801	Canola	extracellular	40.59	44.86
CDX87297	Canola	endoplasmic reticulum, extracellular	37.16	44.44
CDY54317	Canola	endoplasmic reticulum	39.36	43.51
CDY35979	Canola	extracellular	38.63	43.29
CDY57694	Canola	extracellular	39.12	43.24
CDY28002	Canola	extracellular	38.39	43.01
CDY22149	Canola	extracellular	38.14	42.74
CDX79913	Canola	cytosol	21.27	40.85
CDY14785	Canola	extracellular, vacuole	36.43	40.27
CDY48764	Canola	cytosol	19.32	39.3
CDY06908	Canola	extracellular	35.7	39.04
CDX80516	Canola	plastid	25.43	33.99
CDY48765	Canola	extracellular	36.43	33.63
CDX79912	Canola	extracellular, vacuole	36.92	33.56
CDX78563	Canola	extracellular, plasma membrane	27.87	29.61
CDX70545	Canola	extracellular, vacuole	27.14	29.06

Protein Annotations

EnsemblPlants:CDY26302	EnsemblPlantsGene:GSBRNA2T00035001001	Gene3D:2.60.120.260	GO:A0A078GM78	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979	PANTHER:PTHR31265	PANTHER:PTHR31265:SF1
PFAM:PF04862	ProteinID:CDY26302	ProteinID:CDY26302.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF49785
TMHMM:TMhelix	UniParc:UPI0004EF4097	UniProt:A0A078GM78	MapMan:35.2	:	:

Description

BnaA09g26530DBnaA09g26530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GM78]

Coordinates

chrLK032187:+:419141..422221

Molecular Weight (calculated)

44220.2 Da

IEP (calculated)

4.441

GRAVY (calculated)

-0.101

Length

409 amino acids

Sequence
(BLAST)

001: MAPNNSRCKW SSIFMLLLSL SLAVSVAVAT DKAPLVEDGL VINGDFETSP SSGFSDDGIV DGPGEIPSWK SNGTVELINS GQKQGGMILI VPQGRHAVRL
101: GNDAEISQEL TVEKGSVYSV TFSAARTCAQ LESINVSVAS VNANEGDTLA SRDVDLQTLY NVQGWDPYAW AFEAEEDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEEGPWMFR NTSLGVLLPT NLDEETSSLP GWNVESNRAV RFVDSDHFSV PGGKRAVELL SGKEGIISQM VETKADKPYL
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSTFE KVGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFAGSKKT GAGFGFGVSV
401: FVLLVIGLV

Best Arabidopsis Sequence Match ( AT1G29980.1 )
(BLAST)

001: MVPSNNRCKW SSIFLFLLSV SVAVLVAVAD DKSPAVEDGL VINGDFETSP SSGFPDDGVT DGPSDIPSWK SNGTVELINS GQKQGGMILI VPQGRHAVRL
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV

Arabidopsis Description

Uncharacterized protein T1P2.9 [Source:UniProtKB/TrEMBL;Acc:Q9C8S1]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.