CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87297	Canola	endoplasmic reticulum, extracellular	96.77	96.49
CDY57694	Canola	extracellular	90.32	83.24
CDY54317	Canola	endoplasmic reticulum	90.03	82.97
AT1G80240.1	Thale cress	endoplasmic reticulum	87.68	80.81
CDY54909	Canola	cytoskeleton, cytosol, peroxisome	59.82	60.18
CDX97108	Canola	golgi	62.76	58.47
CDY05493	Canola	extracellular	62.17	57.92
CDX85713	Canola	extracellular	62.17	57.92
CDX91217	Canola	extracellular	61.88	57.65
CDX80511	Canola	extracellular	61.88	57.49
CDX88180	Canola	extracellular	61.88	57.49
CDY19801	Canola	extracellular	61.88	57.03
CDX68849	Canola	golgi	60.7	56.71
CDX75247	Canola	golgi	60.12	56.16
CDY28002	Canola	extracellular	50.15	46.85
CDY22149	Canola	extracellular	50.15	46.85
CDY35979	Canola	extracellular	49.85	46.58
CDY14785	Canola	extracellular, vacuole	47.21	43.51
CDX79913	Canola	cytosol	26.69	42.72
CDY06908	Canola	extracellular	46.33	42.25
CDY48764	Canola	cytosol	24.63	41.79
CDX80516	Canola	plastid	36.66	40.85
CDY17255	Canola	plasma membrane	45.75	39.0
CDX84311	Canola	plasma membrane	45.75	39.0
CDY26302	Canola	extracellular, golgi, plasma membrane	44.87	37.41
CDY48765	Canola	extracellular	46.92	36.12
CDX79912	Canola	extracellular, vacuole	47.21	35.78
CDX99870	Canola	plasma membrane	40.47	35.38
CDX78563	Canola	extracellular, plasma membrane	29.03	25.71
CDX70545	Canola	extracellular, vacuole	28.45	25.39

Protein Annotations

EnsemblPlants:CDY39990	EnsemblPlantsGene:GSBRNA2T00068882001	Gene3D:2.60.120.260	InterPro:DUF642	InterPro:Galactose-bd-like_sf	InterPro:IPR008979
PANTHER:PTHR31265	PANTHER:PTHR31265:SF9	PFAM:PF04862	ProteinID:CDY39990	ProteinID:CDY39990.1	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF49785	UniParc:UPI0004EDF0D8	UniProt:A0A078HN89	MapMan:35.2	:

Description

BnaC06g40680DBnaC06g40680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HN89]

Coordinates

chrLK032461:+:280108..281532

Molecular Weight (calculated)

36886.2 Da

IEP (calculated)

6.628

GRAVY (calculated)

-0.051

Length

341 amino acids

Sequence
(BLAST)

001: MYQEVVLLLT LLCVSSSVVI SGPISDGSLL ANGNFEKGPK PSQLKGSVIK GRTAVPNWEI TGFVEYIKAG QKQDDMVLVV PEGSSAVRLG NEASISQKIS
101: VRSGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGSEIE IRIHNPGREE HPACGPLIDA IAIKALFPPR FSGNNLIKNG
201: NFEEGPYVFP KAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFFV PEGHRAIELV GGKESAVSQI VRTSLNKFYA LGFNVGDARD ACEGPMAVEA
301: FAGGRKILVD TFYHMKNDHS GSLCGPVIDD VRLVAVRTLG G

Best Arabidopsis Sequence Match ( AT1G80240.1 )
(BLAST)

001: MMYQEAALLL ALLFISSNVV LSAPVRDGLL PNGNFELGPK PSQMKGSVVK ERTAVPNWNI IGFVEFIKSG QKQDDMVLVV PQGSSAVRLG NEASISQKIS
101: VLPGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPEIE IRFHNPGVEE HPACGPLIDA VAIKALFPPR FSGYNLIKNG
201: NFEEGPYVFP TAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFAV PEGHRAIELV GGKESAISQI VRTSLNKFYA LTFNVGDARD GCEGPMIVEA
301: FAGQGKVMVD YASKGKGGFR RGRLVFKAVS ARTRVTFLST FYHMKSDHSG SLCGPVIDDV RLVAVGKLRG

Arabidopsis Description

At1g80240 [Source:UniProtKB/TrEMBL;Acc:Q9SSB7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.