Factsheet for Os01t0756600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

plasma membrane: 18260611

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0837300-02
Os04t0429800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29980.1	Os03t0837300-02	AT2G23420.1	21798944
AT1G29980.1	Os04t0429800-01	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0531400-00	Rice	cytosol	68.67	99.28
EES01494	Sorghum	plasma membrane	90.98	91.21
Zm00001d043414_P001	Maize	plasma membrane	90.73	91.18
TraesCS3D01G294100.1	Wheat	plasma membrane	88.22	89.34
TraesCS3B01G328900.1	Wheat	plasma membrane	87.97	89.09
TraesCS3A01G294300.1	Wheat	extracellular, golgi, plasma membrane	86.97	87.85
Zm00001d012718_P004	Maize	endoplasmic reticulum, plasma membrane	84.21	80.19
HORVU3Hr1G072860.3	Barley	plastid	83.46	73.35
GSMUA_Achr4P15090_001	Banana	cytosol, endoplasmic reticulum, peroxisome	66.42	69.92
KRH11195	Soybean	endoplasmic reticulum	64.91	65.9
KRH21062	Soybean	endoplasmic reticulum	64.41	65.39
VIT_10s0003g03250.t01	Wine grape	extracellular, golgi, plasma membrane	63.91	65.05
GSMUA_Achr3P31400_001	Banana	plasma membrane	71.93	64.06
PGSC0003DMT400054520	Potato	endoplasmic reticulum, vacuole	62.41	63.68
Solyc02g070540.2.1	Tomato	endoplasmic reticulum, vacuole	62.41	63.68
CDY26302	Canola	extracellular, golgi, plasma membrane	63.91	62.35
Bra032349.1-P	Field mustard	extracellular, golgi, plasma membrane	63.66	62.1
AT1G29980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	63.16	61.92
CDY17255	Canola	plasma membrane	61.65	61.5
CDX84311	Canola	plasma membrane	61.65	61.5
Bra005419.1-P	Field mustard	plasma membrane	61.4	61.25
AT2G34510.1	Thale cress	vacuole	61.4	61.1
CDX99870	Canola	plasma membrane	59.15	60.51
Os01t0611000-01	Rice	extracellular	43.36	46.38
Os04t0494600-01	Rice	extracellular	43.36	45.89
Os02t0205200-01	Rice	mitochondrion, nucleus, plastid	41.35	45.21
Os04t0494900-01	Rice	extracellular	40.35	42.71
Os03t0807700-01	Rice	plastid	41.85	42.49
Os02t0527500-00	Rice	plastid	13.53	41.22
Os04t0494950-01	Rice	extracellular, vacuole	38.35	41.13
Os04t0495000-00	Rice	extracellular, golgi, vacuole	37.09	39.68
Os07t0206900-01	Rice	cytosol, peroxisome	8.27	33.67
Os03t0328501-00	Rice	plastid	19.05	24.44
Os04t0494800-01	Rice	extracellular	14.29	15.04
Os07t0132600-00	Rice	mitochondrion, nucleus, plastid	11.78	12.88

Protein Annotations

Gene3D:2.60.120.260	MapMan:35.2	EntrezGene:4325142	EMBL:AK060989	EMBL:AK102373	ProteinID:BAB90140.1
ProteinID:BAF06203.1	ProteinID:BAS72512.1	ProteinID:BAS74410.1	InterPro:DUF642	ProteinID:EAZ13587.1	InterPro:Galactose-bd-like_sf
InterPro:IPR008979	EnsemblPlantsGene:Os01g0756600	EnsemblPlants:Os01t0756600-01	PFAM:PF04862	PANTHER:PTHR31265	PANTHER:PTHR31265:SF1
UniProt:Q8S0T6	SUPFAM:SSF49785	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00000AB01E	RefSeq:XP_015620881.1
SEG:seg	:	:	:	:	:

Description

Protein of unknown function DUF642 family protein. (Os01t0756600-01)

Coordinates

chr1:+:31749292..31753362

Molecular Weight (calculated)

42257.9 Da

IEP (calculated)

4.248

GRAVY (calculated)

0.029

Length

399 amino acids

Sequence
(BLAST)

001: MEGDSARRLA LLGLCLGLLL LAPSHLASAA AVEDGLLSNG DFETAPAGGF VKSASVAEGA SSIPGWTING TVELISAGQH QGGMILIVPQ GDHAVRLGND
101: ASIGQVVQVE KGSEYAITFS AARTCAQLES LNVSVLGGAS QTVDLQTLYN IEGWDAYALA FQATDEQASL EFRNPGMEDD PTCGPILDNV AIKKLFTPDK
201: PKDTVVSNGD FEEGPWMFPN TSFGVLLPTN LDEQTSALPG WMIESNRAVR FVDSDQYTVP QGKRAIELLS GKEGIISQMV ETTPQKEYSL TFTLGSAGDS
301: CQPPMAVMAF AGDQAQNFHY SPMGNATSQA ANVTFTARAE RTRVAFYSVY YNTRSDDHSS LCGPVIDDVR VWGLNGAAGL KASIGLLLGI VSIVSLMLF

Best Arabidopsis Sequence Match ( AT1G29980.1 )
(BLAST)

001: MVPSNNRCKW SSIFLFLLSV SVAVLVAVAD DKSPAVEDGL VINGDFETSP SSGFPDDGVT DGPSDIPSWK SNGTVELINS GQKQGGMILI VPQGRHAVRL
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV

Arabidopsis Description

Uncharacterized protein T1P2.9 [Source:UniProtKB/TrEMBL;Acc:Q9C8S1]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.