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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 5
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, nucleus, plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:mitochondrion
YLoc:mitochondrion
 nucleus: 26035336
plastid: 27992503
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG29757 Sorghum golgi 84.66 83.06
TraesCS6A01G177500.1 Wheat extracellular 84.66 82.62
HORVU6Hr1G037000.1 Barley extracellular 84.38 82.35
TraesCS6D01G166800.1 Wheat extracellular, golgi, vacuole 76.71 82.35
TraesCS6B01G207200.1 Wheat extracellular 84.38 82.35
Os02t0527500-00 Rice plastid 28.49 79.39
GSMUA_Achr7P08400_001 Banana endoplasmic reticulum, extracellular, vacuole 70.68 70.3
GSMUA_Achr2P17020_001 Banana endoplasmic reticulum, vacuole 67.95 67.57
VIT_04s0008g05010.t01 Wine grape extracellular, golgi 65.21 64.67
Bra023324.1-P Field mustard cytoskeleton, cytosol, peroxisome 60.0 64.41
CDY54909 Canola cytoskeleton, cytosol, peroxisome 58.36 62.83
Os01t0611000-01 Rice extracellular 64.11 62.73
Bra011349.1-P Field mustard golgi 62.19 62.19
CDX75247 Canola golgi 62.19 62.19
AT4G32460.1 Thale cress endoplasmic reticulum, golgi 61.92 61.92
CDX68849 Canola golgi 61.92 61.92
PGSC0003DMT400074806 Potato extracellular 62.47 61.46
KRH05109 Soybean nucleus 61.37 61.2
Solyc08g067030.2.1 Tomato extracellular 62.19 61.19
KRH16010 Soybean nucleus 60.82 60.66
AT5G11420.1 Thale cress extracellular, golgi, vacuole 60.55 60.38
CDX97108 Canola golgi 60.55 60.38
CDY19801 Canola extracellular 61.1 60.27
CDX91217 Canola extracellular 60.27 60.11
Bra009841.1-P Field mustard extracellular 60.27 59.95
CDX80511 Canola extracellular 60.27 59.95
CDX88180 Canola extracellular 60.27 59.95
AT5G25460.1 Thale cress endoplasmic reticulum, extracellular 60.55 59.89
CDX85713 Canola extracellular 60.0 59.84
KRH52489 Soybean extracellular, golgi 60.27 59.46
KRH52488 Soybean extracellular 58.9 58.9
CDY05493 Canola extracellular 58.9 58.74
Bra020500.1-P Field mustard extracellular 58.9 58.74
Solyc06g067910.2.1 Tomato nucleus 57.81 56.72
KRH09784 Soybean nucleus 58.08 56.68
PGSC0003DMT400073388 Potato mitochondrion 57.53 56.6
Os04t0494950-01 Rice extracellular, vacuole 57.53 56.45
PGSC0003DMT400073682 Potato cytosol 51.78 56.42
KRH23537 Soybean nucleus 57.53 56.15
PGSC0003DMT400014547 Potato extracellular 56.44 55.98
Os04t0494600-01 Rice extracellular 56.99 55.17
Os04t0495000-00 Rice extracellular, golgi, vacuole 55.62 54.42
VIT_09s0002g05930.t01 Wine grape endoplasmic reticulum, extracellular 60.27 54.32
Solyc03g120040.2.1 Tomato extracellular, nucleus 38.36 54.26
Solyc12g042930.1.1 Tomato endoplasmic reticulum, golgi 56.44 54.21
Os04t0494900-01 Rice extracellular 55.34 53.58
Zm00001d015715_P001 Maize plasma membrane 81.92 51.02
KRH44408 Soybean golgi 57.53 48.05
CDX80516 Canola plastid 39.45 47.06
Os03t0807700-01 Rice plastid 49.04 45.55
Os01t0531400-00 Rice cytosol 32.05 42.39
Os01t0756600-01 Rice plasma membrane 45.21 41.35
Os07t0206900-01 Rice cytosol, peroxisome 10.96 40.82
Os03t0328501-00 Rice plastid 27.12 31.83
Os04t0494800-01 Rice extracellular 21.1 20.32
Os07t0132600-00 Rice mitochondrion, nucleus, plastid 19.18 19.18
Protein Annotations
EnsemblPlants:Os02t0205200-01EnsemblPlantsGene:Os02g0205200Gene3D:2.60.120.260InterPro:DUF642InterPro:Galactose-bd-like_sfInterPro:IPR008979
PANTHER:PTHR31265PANTHER:PTHR31265:SF3PFAM:PF04862ProteinID:BAF08161.2ProteinID:BAS77553.1SEG:seg
UniParc:UPI0001B65F71UniProt:Q0E2X7MapMan:35.2:::
Description
Similar to Unidentified precursor. (Os02t0205200-01)
Coordinates
chr2:-:5912613..5914192
Molecular Weight (calculated)
39259.7 Da
IEP (calculated)
10.376
GRAVY (calculated)
-0.168
Length
365 amino acids
Sequence
(BLAST)
001: CVRFRVCNAR RRRGAGLLAN GNFERGPAPS QLRGTRVVGA SAIPSWRTSG FVEYIPSGRK QGDMVLVVPE GSHAVRLGNE ASIRQRLAGA ARGARYALTF
101: SAARTCAQAE RLNVSASGQW AVLPMQTMYS SNGWDSYAWA WDAAADAFDV VIHNPGVTED PACGPLIDSV AIRTLNPPRR TNKNLVKNGD FEEGPYIIPG
201: TRWGVLIPSM VVDEHSPLPG WMVESLKAVK YIDSDHFAVP RGRRAVELLA GRESAIAQVI RTVPGRQYAL SFTVGDASNG CEGSLVVEAY AGRESTRVAH
301: ESAGRGGAAK RAVLPFRAAA ARTRVVFFSS FYSTRSDDMS SLCGPVIDDV AVVSVRARRP AAKRG
Best Arabidopsis Sequence Match ( AT4G32460.1 )
(BLAST)
001: MKEMGVIVLL LLHSFFYVAF CFNDGLLPNG DFELGPRHSD MKGTQVINIT AIPNWELSGF VEYIPSGHKQ GDMILVVPKG AFAVRLGNEA SIKQKISVKK
101: GSYYSITFSA ARTCAQDERL NVSVAPHHAV MPIQTVYSSS GWDLYSWAFK AQSDYADIVI HNPGVEEDPA CGPLIDGVAM RALFPPRPTN KNILKNGGFE
201: EGPWVLPNIS SGVLIPPNSI DDHSPLPGWM VESLKAVKYI DSDHFSVPQG RRAVELVAGK ESAVAQVVRT IPGKTYVLSF SVGDASNACA GSMIVEAFAG
301: KDTIKVPYES KGKGGFKRSS LRFVAVSSRT RVMFYSTFYA MRNDDFSSLC GPVIDDVKLL SARRP
Arabidopsis Description
At4g32460 [Source:UniProtKB/TrEMBL;Acc:Q8LAR0]
SUBAcon: [golgi,endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.