Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 5
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6A01G177500.1 | Wheat | extracellular | 98.24 | 89.3 |
TraesCS6B01G207200.1 | Wheat | extracellular | 97.65 | 88.77 |
HORVU6Hr1G037000.1 | Barley | extracellular | 97.06 | 88.24 |
KXG29757 | Sorghum | golgi | 85.29 | 77.96 |
Os02t0205200-01 | Rice | mitochondrion, nucleus, plastid | 82.35 | 76.71 |
GSMUA_Achr7P08400_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 72.35 | 67.03 |
GSMUA_Achr2P17020_001 | Banana | endoplasmic reticulum, vacuole | 68.82 | 63.76 |
VIT_04s0008g05010.t01 | Wine grape | extracellular, golgi | 65.29 | 60.33 |
CDX68849 | Canola | golgi | 61.76 | 57.53 |
Bra011349.1-P | Field mustard | golgi | 61.47 | 57.26 |
CDX75247 | Canola | golgi | 61.47 | 57.26 |
AT4G32460.1 | Thale cress | endoplasmic reticulum, golgi | 61.47 | 57.26 |
Bra023324.1-P | Field mustard | cytoskeleton, cytosol, peroxisome | 57.06 | 57.06 |
KRH05109 | Soybean | nucleus | 61.18 | 56.83 |
KRH16010 | Soybean | nucleus | 60.88 | 56.56 |
PGSC0003DMT400074806 | Potato | extracellular | 61.47 | 56.33 |
Solyc08g067030.2.1 | Tomato | extracellular | 61.18 | 56.06 |
CDY54909 | Canola | cytoskeleton, cytosol, peroxisome | 55.59 | 55.75 |
AT5G11420.1 | Thale cress | extracellular, golgi, vacuole | 59.41 | 55.19 |
CDX97108 | Canola | golgi | 59.12 | 54.92 |
KRH52489 | Soybean | extracellular, golgi | 59.71 | 54.86 |
TraesCS7D01G442500.1 | Wheat | golgi | 59.71 | 54.86 |
CDX91217 | Canola | extracellular | 58.82 | 54.64 |
CDX85713 | Canola | extracellular | 58.53 | 54.37 |
CDY19801 | Canola | extracellular | 58.82 | 54.05 |
CDX80511 | Canola | extracellular | 58.24 | 53.95 |
Bra009841.1-P | Field mustard | extracellular | 58.24 | 53.95 |
CDX88180 | Canola | extracellular | 58.24 | 53.95 |
AT5G25460.1 | Thale cress | endoplasmic reticulum, extracellular | 58.53 | 53.93 |
KRH52488 | Soybean | extracellular | 57.65 | 53.7 |
CDY05493 | Canola | extracellular | 57.65 | 53.55 |
Bra020500.1-P | Field mustard | extracellular | 57.65 | 53.55 |
Solyc06g067910.2.1 | Tomato | nucleus | 58.53 | 53.49 |
PGSC0003DMT400073388 | Potato | mitochondrion | 58.24 | 53.37 |
PGSC0003DMT400014547 | Potato | extracellular | 57.35 | 52.99 |
KRH23537 | Soybean | nucleus | 57.35 | 52.14 |
KRH09784 | Soybean | nucleus | 56.76 | 51.6 |
PGSC0003DMT400073682 | Potato | cytosol | 50.59 | 51.34 |
VIT_09s0002g05930.t01 | Wine grape | endoplasmic reticulum, extracellular | 60.88 | 51.11 |
Solyc12g042930.1.1 | Tomato | endoplasmic reticulum, golgi | 56.47 | 50.53 |
Solyc03g120040.2.1 | Tomato | extracellular, nucleus | 38.24 | 50.39 |
TraesCS2D01G432500.1 | Wheat | extracellular, golgi | 54.71 | 49.87 |
TraesCS2D01G349800.1 | Wheat | mitochondrion | 54.41 | 49.07 |
CDX80516 | Canola | plastid | 43.53 | 48.37 |
Zm00001d015715_P001 | Maize | plasma membrane | 82.06 | 47.61 |
TraesCS2D01G349700.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 52.65 | 47.23 |
TraesCS2D01G349900.1 | Wheat | extracellular | 50.59 | 47.12 |
TraesCS5D01G395400.1 | Wheat | extracellular | 52.35 | 47.09 |
Os02t0527500-00 | Rice | plastid | 17.94 | 46.56 |
TraesCS2D01G349500.1 | Wheat | extracellular | 50.0 | 45.09 |
KRH44408 | Soybean | golgi | 56.76 | 44.16 |
TraesCS2D01G349200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 48.53 | 43.54 |
TraesCS5D01G469800.1 | Wheat | extracellular, vacuole | 46.76 | 40.05 |
TraesCS3D01G294100.1 | Wheat | plasma membrane | 42.35 | 36.55 |
Protein Annotations
EnsemblPlants:TraesCS6D01G166800.1 | EnsemblPlantsGene:TraesCS6D01G166800 | Gene3D:2.60.120.260 | InterPro:DUF642 | InterPro:Galactose-bd-like_sf | InterPro:IPR008979 |
PANTHER:PTHR31265 | PANTHER:PTHR31265:SF3 | PFAM:PF04862 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix |
MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:148797176..148798780
Molecular Weight (calculated)
36609.8 Da
IEP (calculated)
9.361
GRAVY (calculated)
-0.132
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSAMSGLV LLLLCATCRL ALGITDGLLA NGNFERGPQP SQLRGTQVVG ASSIPSWRTS GFVEYIPSGR KQGDMVLVVP EARGRAERLN VSASGQSGVL
101: VMQTMYSSNG WDSYSWAWDA TADEVEVVVH NPGVTEDPAC GPLIDSVAIK TLTPPRRTNK NLVKNGDFEE GPYIIPGTKW GVLIPSRMVD EHSPLPGWMV
201: ESLKAVKYID SDHFAVPRGR RAVELLAGRE SAIAQVIRTV PGRQYALSFS VGNASNTCRG SLMVEAYAGR ESTKVPYESA GQGGAAKRAV LPFRATSSRT
301: RVVFFSSFYN TRTDDMSSLC GPVIDDVAVV SVRARPPKRA
101: VMQTMYSSNG WDSYSWAWDA TADEVEVVVH NPGVTEDPAC GPLIDSVAIK TLTPPRRTNK NLVKNGDFEE GPYIIPGTKW GVLIPSRMVD EHSPLPGWMV
201: ESLKAVKYID SDHFAVPRGR RAVELLAGRE SAIAQVIRTV PGRQYALSFS VGNASNTCRG SLMVEAYAGR ESTKVPYESA GQGGAAKRAV LPFRATSSRT
301: RVVFFSSFYN TRTDDMSSLC GPVIDDVAVV SVRARPPKRA
001: MKEMGVIVLL LLHSFFYVAF CFNDGLLPNG DFELGPRHSD MKGTQVINIT AIPNWELSGF VEYIPSGHKQ GDMILVVPKG AFAVRLGNEA SIKQKISVKK
101: GSYYSITFSA ARTCAQDERL NVSVAPHHAV MPIQTVYSSS GWDLYSWAFK AQSDYADIVI HNPGVEEDPA CGPLIDGVAM RALFPPRPTN KNILKNGGFE
201: EGPWVLPNIS SGVLIPPNSI DDHSPLPGWM VESLKAVKYI DSDHFSVPQG RRAVELVAGK ESAVAQVVRT IPGKTYVLSF SVGDASNACA GSMIVEAFAG
301: KDTIKVPYES KGKGGFKRSS LRFVAVSSRT RVMFYSTFYA MRNDDFSSLC GPVIDDVKLL SARRP
101: GSYYSITFSA ARTCAQDERL NVSVAPHHAV MPIQTVYSSS GWDLYSWAFK AQSDYADIVI HNPGVEEDPA CGPLIDGVAM RALFPPRPTN KNILKNGGFE
201: EGPWVLPNIS SGVLIPPNSI DDHSPLPGWM VESLKAVKYI DSDHFSVPQG RRAVELVAGK ESAVAQVVRT IPGKTYVLSF SVGDASNACA GSMIVEAFAG
301: KDTIKVPYES KGKGGFKRSS LRFVAVSSRT RVMFYSTFYA MRNDDFSSLC GPVIDDVKLL SARRP
Arabidopsis Description
At4g32460 [Source:UniProtKB/TrEMBL;Acc:Q8LAR0]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.