Factsheet for Solyc06g067910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073388	Potato	mitochondrion	97.85	98.11
Solyc03g120040.2.1	Tomato	extracellular, nucleus	56.72	81.78
Solyc12g042930.1.1	Tomato	endoplasmic reticulum, golgi	80.38	78.68
KRH09784	Soybean	nucleus	68.55	68.18
KRH23537	Soybean	nucleus	67.74	67.38
VIT_09s0002g05930.t01	Wine grape	endoplasmic reticulum, extracellular	72.85	66.91
GSMUA_Achr1P14570_001	Banana	extracellular	65.86	66.58
GSMUA_Achr7P08400_001	Banana	endoplasmic reticulum, extracellular, vacuole	65.05	65.94
GSMUA_Achr2P08300_001	Banana	extracellular	64.78	65.31
GSMUA_Achr2P17020_001	Banana	endoplasmic reticulum, vacuole	63.71	64.58
Solyc08g067030.2.1	Tomato	extracellular	62.9	63.07
TraesCS7B01G353600.2	Wheat	extracellular	60.22	60.54
OQU87155	Sorghum	golgi	60.48	60.0
TraesCS7A01G453100.1	Wheat	golgi	59.68	60.0
Os01t0611000-01	Rice	extracellular	59.95	59.79
TraesCS7D01G442500.1	Wheat	golgi	59.41	59.73
HORVU6Hr1G037000.1	Barley	extracellular	59.95	59.63
TraesCS6A01G177500.1	Wheat	extracellular	59.68	59.36
TraesCS6B01G207200.1	Wheat	extracellular	59.41	59.09
KXG29757	Sorghum	golgi	58.87	58.87
TraesCS6D01G166800.1	Wheat	extracellular, golgi, vacuole	53.49	58.53
Zm00001d044455_P001	Maize	plasma membrane	59.68	58.27
Os02t0205200-01	Rice	mitochondrion, nucleus, plastid	56.72	57.81
Os04t0494950-01	Rice	extracellular, vacuole	55.65	55.65
KRH44408	Soybean	golgi	65.32	55.61
EES11052	Sorghum	mitochondrion	56.45	55.41
Zm00001d003186_P001	Maize	extracellular	56.45	55.41
TraesCS2D01G432500.1	Wheat	extracellular, golgi	55.38	55.23
TraesCS2B01G455800.1	Wheat	golgi	55.38	55.23
TraesCS2A01G434700.1	Wheat	golgi	55.11	54.96
TraesCS2B01G369800.1	Wheat	extracellular	55.38	54.93
TraesCS2D01G349900.1	Wheat	extracellular	53.76	54.79
TraesCS2B01G369900.1	Wheat	extracellular	53.76	54.79
Zm00001d003183_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	55.91	54.74
TraesCS2A01G351600.1	Wheat	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	55.38	54.64
TraesCS2A01G351700.1	Wheat	extracellular	53.49	54.52
HORVU2Hr1G085440.1	Barley	extracellular	55.38	54.5
Os04t0494900-01	Rice	extracellular	55.11	54.38
Os04t0494600-01	Rice	extracellular	55.11	54.38
TraesCS2D01G349800.1	Wheat	mitochondrion	55.11	54.38
OQU81862	Sorghum	cytosol, endoplasmic reticulum, golgi, mitochondrion	57.26	54.34
KXG26630	Sorghum	extracellular	54.03	52.89
Os04t0495000-00	Rice	extracellular, golgi, vacuole	52.96	52.81
TraesCS5B01G390400.1	Wheat	plastid	43.55	52.77
TraesCS5A01G385400.1	Wheat	extracellular	53.23	52.52
TraesCS2B01G369700.1	Wheat	endoplasmic reticulum, golgi	53.49	52.51
TraesCS2D01G349700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	53.49	52.51
EES11054	Sorghum	extracellular, vacuole	53.23	52.38
TraesCS5D01G395400.1	Wheat	extracellular	53.23	52.38
Zm00001d003184_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, peroxisome	50.54	52.37
TraesCS2A01G351500.1	Wheat	extracellular, golgi	53.23	52.24
EES11053	Sorghum	endoplasmic reticulum, extracellular, vacuole	52.69	51.99
Solyc01g087540.2.1	Tomato	extracellular	51.08	51.77
HORVU2Hr1G085430.1	Barley	endoplasmic reticulum, golgi	52.42	51.59
TraesCS2B01G369500.1	Wheat	cytosol	49.46	51.4
HORVU5Hr1G094750.2	Barley	extracellular	52.69	50.78
TraesCS2A01G351400.1	Wheat	extracellular	51.34	50.66
TraesCS2D01G349500.1	Wheat	extracellular	50.81	50.13
Os02t0527500-00	Rice	plastid	17.47	49.62
TraesCS2A01G351200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	50.27	49.34
TraesCS2D01G349200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	50.0	49.08
TraesCS2B01G369300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	49.73	48.81
Zm00001d003187_P002	Maize	endoplasmic reticulum, plasma membrane	51.61	48.36
TraesCS2A01G421300.1	Wheat	extracellular	49.46	47.79
TraesCS2B01G440300.1	Wheat	extracellular	49.19	47.66
KXG26629	Sorghum	golgi	51.08	45.89
Zm00001d025754_P001	Maize	golgi	50.27	45.83
Solyc04g015610.2.1	Tomato	extracellular	45.16	45.53
HORVU2Hr1G085370.2	Barley	endoplasmic reticulum	46.51	45.53
Solyc04g015620.2.1	Tomato	plastid	44.09	44.32
Solyc02g070540.2.1	Tomato	endoplasmic reticulum, vacuole	46.24	43.99
HORVU2Hr1G085340.2	Barley	mitochondrion, plastid	51.34	38.2
Zm00001d015715_P001	Maize	plasma membrane	59.14	37.54
HORVU2Hr1G085520.2	Barley	extracellular	33.06	33.7
Os03t0328501-00	Rice	plastid	27.96	33.44
Zm00001d003185_P001	Maize	extracellular	54.3	29.19
Os04t0494800-01	Rice	extracellular	19.62	19.26
Os07t0132600-00	Rice	mitochondrion, nucleus, plastid	18.28	18.63

Protein Annotations

EnsemblPlants:Solyc06g067910.2.1	EnsemblPlantsGene:Solyc06g067910.2	InterPro:DUF642	PANTHER:PTHR31265	PANTHER:PTHR31265:SF9	PFAM:PF04862
SignalP:SignalP-noTM	UniParc:UPI0002766166	UniProt:K4C7W6	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6:-:42089623..42093038

Molecular Weight (calculated)

41074.4 Da

IEP (calculated)

8.550

GRAVY (calculated)

-0.228

Length

372 amino acids

Sequence
(BLAST)

001: MKKAAAILLV LLFATVANSS QKDGLLSNGN FELGPKPSQM KGTKVVDRHA IPNWEISGYV EYIKSGQTQG DMLLPVPQGD YAVRLGEDAS IKTKVKVTKG
101: IFYSISFVFA RTCAQEEKLN VSVSPNSEPN DWGMLPLQTM YSSEGWDSYS WGFLAEADEI DIVIHNPAVE KDPACGPLID FVALKALKTP KRPRGNMLKN
201: GNFEEGPYIF PNTTWGVLIP PNIEDDHSPL LGWMIESLKA VKYIDSEHFH VPQGKRAVEL VAGRESAIAQ VVRTRPGKIY DLLFSIGDAS NSCEGSMLVE
301: AFAGKITMQF PYESKGKGGF KRARLRFTAI SPRTRVRFLS TYYHMKSDNS GSLCGPVVDD VRLVGLRNPH LP

Best Arabidopsis Sequence Match ( AT5G11420.1 )
(BLAST)

001: MKGGSLSFLF VLLIATITSV ICFSDGMLPN GDFELGPKPS DMKGTQVINK KAIPSWELSG FVEYIKSGQK QGDMLLVVPA GKFAIRLGNE ASIKQRLNVT
101: KGMYYSLTFS AARTCAQDER LNISVAPDSG VIPIQTVYSS SGWDLYAWAF QAESNVAEIV IHNPGEEEDP ACGPLIDGVA IKALYPPRPT NKNILKNGGF
201: EEGPYVLPNA TTGVLVPPFI EDDHSPLPAW MVESLKAIKY VDVEHFSVPQ GRRAVELVAG KESAIAQVAR TVVGKTYVLS FAVGDANNAC QGSMVVEAFA
301: GKDTLKVPYE SRGKGGFKRA SLRFVAVSTR TRVMFYSTFY SMRSDDFSSL CGPVIDDVKL LSARKP

Arabidopsis Description

Uncharacterized protein At5g11420 [Source:UniProtKB/TrEMBL;Acc:Q9LYE7]
SUBAcon: [extracellular,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.