Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
24083427
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G395400.1 | Wheat | extracellular | 67.37 | 67.2 |
| Os04t0494900-01 | Rice | extracellular | 67.11 | 67.11 |
| Os04t0494950-01 | Rice | extracellular, vacuole | 65.78 | 66.67 |
| TraesCS5A01G385400.1 | Wheat | extracellular | 66.58 | 66.58 |
| TraesCS2B01G369500.1 | Wheat | cytosol | 62.86 | 66.2 |
| Os01t0611000-01 | Rice | extracellular | 64.99 | 65.68 |
| TraesCS5B01G390400.1 | Wheat | plastid | 53.32 | 65.47 |
| GSMUA_Achr1P14570_001 | Banana | extracellular | 62.86 | 64.4 |
| TraesCS2D01G349500.1 | Wheat | extracellular | 64.19 | 64.19 |
| HORVU5Hr1G094750.2 | Barley | extracellular | 65.25 | 63.73 |
| TraesCS2A01G351400.1 | Wheat | extracellular | 63.66 | 63.66 |
| GSMUA_Achr2P08300_001 | Banana | extracellular | 62.07 | 63.41 |
| Os04t0495000-00 | Rice | extracellular, golgi, vacuole | 61.8 | 62.47 |
| TraesCS2A01G351200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 62.07 | 61.74 |
| TraesCS2B01G369300.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 62.07 | 61.74 |
| TraesCS2D01G349200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 61.01 | 60.69 |
| Bra023324.1-P | Field mustard | cytoskeleton, cytosol, peroxisome | 54.38 | 60.29 |
| Solyc08g067030.2.1 | Tomato | extracellular | 59.15 | 60.11 |
| PGSC0003DMT400074806 | Potato | extracellular | 59.15 | 60.11 |
| TraesCS2B01G440300.1 | Wheat | extracellular | 60.74 | 59.64 |
| Zm00001d003187_P002 | Maize | endoplasmic reticulum, plasma membrane | 62.33 | 59.19 |
| KXG26629 | Sorghum | golgi | 64.99 | 59.18 |
| VIT_04s0008g05010.t01 | Wine grape | extracellular, golgi | 57.56 | 58.97 |
| TraesCS2A01G421300.1 | Wheat | extracellular | 59.95 | 58.7 |
| CDY54909 | Canola | cytoskeleton, cytosol, peroxisome | 52.52 | 58.41 |
| KRH05109 | Soybean | nucleus | 56.5 | 58.2 |
| AT5G11420.1 | Thale cress | extracellular, golgi, vacuole | 56.23 | 57.92 |
| KRH16010 | Soybean | nucleus | 56.23 | 57.92 |
| AT4G32460.1 | Thale cress | endoplasmic reticulum, golgi | 55.97 | 57.81 |
| CDX91217 | Canola | extracellular | 55.97 | 57.65 |
| CDX85713 | Canola | extracellular | 55.44 | 57.1 |
| Os02t0205200-01 | Rice | mitochondrion, nucleus, plastid | 55.17 | 56.99 |
| CDX75247 | Canola | golgi | 55.17 | 56.99 |
| CDX68849 | Canola | golgi | 55.17 | 56.99 |
| Bra011349.1-P | Field mustard | golgi | 55.17 | 56.99 |
| HORVU2Hr1G085370.2 | Barley | endoplasmic reticulum | 57.29 | 56.84 |
| CDX97108 | Canola | golgi | 55.17 | 56.83 |
| CDX88180 | Canola | extracellular | 54.91 | 56.4 |
| CDX80511 | Canola | extracellular | 54.91 | 56.4 |
| Bra009841.1-P | Field mustard | extracellular | 54.91 | 56.4 |
| Solyc03g120040.2.1 | Tomato | extracellular, nucleus | 38.46 | 56.2 |
| CDY19801 | Canola | extracellular | 54.64 | 55.68 |
| AT5G25460.1 | Thale cress | endoplasmic reticulum, extracellular | 54.38 | 55.56 |
| CDY05493 | Canola | extracellular | 53.85 | 55.46 |
| Bra020500.1-P | Field mustard | extracellular | 53.85 | 55.46 |
| PGSC0003DMT400073388 | Potato | mitochondrion | 54.38 | 55.26 |
| Zm00001d025754_P001 | Maize | golgi | 59.68 | 55.15 |
| Solyc06g067910.2.1 | Tomato | nucleus | 54.38 | 55.11 |
| VIT_09s0002g05930.t01 | Wine grape | endoplasmic reticulum, extracellular | 59.15 | 55.06 |
| PGSC0003DMT400014547 | Potato | extracellular | 53.32 | 54.62 |
| KRH09784 | Soybean | nucleus | 53.58 | 54.01 |
| KRH23537 | Soybean | nucleus | 53.32 | 53.74 |
| PGSC0003DMT400073682 | Potato | cytosol | 47.48 | 53.43 |
| KRH52488 | Soybean | extracellular | 51.46 | 53.15 |
| KRH52489 | Soybean | extracellular, golgi | 51.99 | 52.97 |
| Solyc12g042930.1.1 | Tomato | endoplasmic reticulum, golgi | 51.99 | 51.58 |
| HORVU2Hr1G085340.2 | Barley | mitochondrion, plastid | 66.05 | 49.8 |
| Os02t0527500-00 | Rice | plastid | 16.71 | 48.09 |
| KRH44408 | Soybean | golgi | 52.52 | 45.31 |
| Os01t0756600-01 | Rice | plasma membrane | 45.89 | 43.36 |
| Os01t0531400-00 | Rice | cytosol | 30.5 | 41.67 |
| Os03t0807700-01 | Rice | plastid | 42.97 | 41.22 |
| CDX80516 | Canola | plastid | 32.89 | 40.52 |
| Os03t0328501-00 | Rice | plastid | 32.1 | 38.91 |
| Os07t0206900-01 | Rice | cytosol, peroxisome | 9.28 | 35.71 |
| Os04t0494800-01 | Rice | extracellular | 26.26 | 26.12 |
| Os07t0132600-00 | Rice | mitochondrion, nucleus, plastid | 19.89 | 20.55 |
Protein Annotations
| EMBL:AK110895 | EnsemblPlants:Os04t0494600-01 | EnsemblPlantsGene:Os04g0494600 | EntrezGene:4336267 | Gene3D:2.60.120.260 | InterPro:DUF642 |
| InterPro:Galactose-bd-like_sf | InterPro:IPR008979 | PANTHER:PTHR31265 | PANTHER:PTHR31265:SF11 | PFAM:PF04862 | ProteinID:BAF15102.1 |
| ProteinID:BAS89872.1 | ProteinID:CAD41544.2 | ProteinID:EAZ31209.1 | RefSeq:XP_015634589.1 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF49785 | UniParc:UPI00001B0D55 | UniProt:Q7XU61 | MapMan:35.2 | : | : |
Description
Protein of unknown function DUF642 family protein. (Os04t0494600-01)
Coordinates
chr4:+:24725907..24728708
Molecular Weight (calculated)
40461.0 Da
IEP (calculated)
5.370
GRAVY (calculated)
-0.077
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFYNGASVV ALLLLVSTAA RAAGDGLLLN GNFEYQPSKS QMNGTRVMAE YAIPYWKITG FVEYISSGQK QGDMLLTVPE GAHAVRLGNE ASIEQQISVT
101: RGMYYSITFS AARTCAQSEK LNVSVAPGPE SGELPIQTVY TSSGWDSYAW AFKAKRGLVS LIIHNHGEDD DPACGPLIDS VAIKTLYPPQ ATQNNMLRNG
201: DFEEGPYMFP NAAWGVMVPP ISEDDHSPLP GWMVMSDTKA VKCVDSAHFT VPHGARAVEL VSGLETALMQ EVRTVPGRSY RLEFSVGDAS DGCVGSMQVK
301: GYAGQGCTTV TYSSQGTGGH TRASLEFAAV ANTTRVVFVS STYITKWDGT LCGPVVDDAS LVCVSQQQPP ARRLLRL
101: RGMYYSITFS AARTCAQSEK LNVSVAPGPE SGELPIQTVY TSSGWDSYAW AFKAKRGLVS LIIHNHGEDD DPACGPLIDS VAIKTLYPPQ ATQNNMLRNG
201: DFEEGPYMFP NAAWGVMVPP ISEDDHSPLP GWMVMSDTKA VKCVDSAHFT VPHGARAVEL VSGLETALMQ EVRTVPGRSY RLEFSVGDAS DGCVGSMQVK
301: GYAGQGCTTV TYSSQGTGGH TRASLEFAAV ANTTRVVFVS STYITKWDGT LCGPVVDDAS LVCVSQQQPP ARRLLRL
001: MKGGSLSFLF VLLIATITSV ICFSDGMLPN GDFELGPKPS DMKGTQVINK KAIPSWELSG FVEYIKSGQK QGDMLLVVPA GKFAIRLGNE ASIKQRLNVT
101: KGMYYSLTFS AARTCAQDER LNISVAPDSG VIPIQTVYSS SGWDLYAWAF QAESNVAEIV IHNPGEEEDP ACGPLIDGVA IKALYPPRPT NKNILKNGGF
201: EEGPYVLPNA TTGVLVPPFI EDDHSPLPAW MVESLKAIKY VDVEHFSVPQ GRRAVELVAG KESAIAQVAR TVVGKTYVLS FAVGDANNAC QGSMVVEAFA
301: GKDTLKVPYE SRGKGGFKRA SLRFVAVSTR TRVMFYSTFY SMRSDDFSSL CGPVIDDVKL LSARKP
101: KGMYYSLTFS AARTCAQDER LNISVAPDSG VIPIQTVYSS SGWDLYAWAF QAESNVAEIV IHNPGEEEDP ACGPLIDGVA IKALYPPRPT NKNILKNGGF
201: EEGPYVLPNA TTGVLVPPFI EDDHSPLPAW MVESLKAIKY VDVEHFSVPQ GRRAVELVAG KESAIAQVAR TVVGKTYVLS FAVGDANNAC QGSMVVEAFA
301: GKDTLKVPYE SRGKGGFKRA SLRFVAVSTR TRVMFYSTFY SMRSDDFSSL CGPVIDDVKL LSARKP
Arabidopsis Description
Uncharacterized protein At5g11420 [Source:UniProtKB/TrEMBL;Acc:Q9LYE7]
SUBAcon: [golgi,extracellular,vacuole]
SUBAcon: [golgi,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.