Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G369300.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 82.37 | 82.59 |
| TraesCS2D01G349200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 81.84 | 82.06 |
| TraesCS2A01G351200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 81.84 | 82.06 |
| HORVU5Hr1G094750.2 | Barley | extracellular | 58.42 | 57.51 |
| Os04t0494600-01 | Rice | extracellular | 56.84 | 57.29 |
| HORVU2Hr1G085430.1 | Barley | endoplasmic reticulum, golgi | 55.0 | 55.29 |
| HORVU2Hr1G085440.1 | Barley | extracellular | 52.37 | 52.65 |
| GSMUA_Achr1P14570_001 | Banana | extracellular | 50.79 | 52.45 |
| Zm00001d003187_P002 | Maize | endoplasmic reticulum, plasma membrane | 53.68 | 51.39 |
| GSMUA_Achr2P08300_001 | Banana | extracellular | 49.21 | 50.68 |
| KXG26629 | Sorghum | golgi | 54.74 | 50.24 |
| Solyc03g120040.2.1 | Tomato | extracellular, nucleus | 33.95 | 50.0 |
| Bra023324.1-P | Field mustard | cytoskeleton, cytosol, peroxisome | 44.47 | 49.71 |
| Zm00001d025754_P001 | Maize | golgi | 52.37 | 48.77 |
| PGSC0003DMT400074806 | Potato | extracellular | 46.32 | 47.44 |
| HORVU6Hr1G037000.1 | Barley | extracellular | 46.58 | 47.33 |
| Solyc08g067030.2.1 | Tomato | extracellular | 46.05 | 47.17 |
| CDX91217 | Canola | extracellular | 45.26 | 46.99 |
| CDX85713 | Canola | extracellular | 45.26 | 46.99 |
| PGSC0003DMT400073388 | Potato | mitochondrion | 45.53 | 46.63 |
| Solyc06g067910.2.1 | Tomato | nucleus | 45.53 | 46.51 |
| AT5G11420.1 | Thale cress | extracellular, golgi, vacuole | 44.74 | 46.45 |
| CDY54909 | Canola | cytoskeleton, cytosol, peroxisome | 41.32 | 46.31 |
| KRH09784 | Soybean | nucleus | 45.53 | 46.26 |
| VIT_04s0008g05010.t01 | Wine grape | extracellular, golgi | 44.74 | 46.2 |
| KRH23537 | Soybean | nucleus | 45.26 | 45.99 |
| PGSC0003DMT400014547 | Potato | extracellular | 44.47 | 45.92 |
| CDX97108 | Canola | golgi | 43.95 | 45.63 |
| AT5G25460.1 | Thale cress | endoplasmic reticulum, extracellular | 43.95 | 45.26 |
| AT4G32460.1 | Thale cress | endoplasmic reticulum, golgi | 43.42 | 45.21 |
| KRH05109 | Soybean | nucleus | 43.42 | 45.08 |
| CDX80511 | Canola | extracellular | 43.42 | 44.96 |
| Bra009841.1-P | Field mustard | extracellular | 43.42 | 44.96 |
| CDX88180 | Canola | extracellular | 43.42 | 44.96 |
| CDY19801 | Canola | extracellular | 43.68 | 44.86 |
| KRH16010 | Soybean | nucleus | 43.16 | 44.81 |
| PGSC0003DMT400073682 | Potato | cytosol | 39.47 | 44.78 |
| HORVU2Hr1G085340.2 | Barley | mitochondrion, plastid | 58.16 | 44.2 |
| CDY05493 | Canola | extracellular | 42.37 | 43.99 |
| Bra020500.1-P | Field mustard | extracellular | 42.37 | 43.99 |
| CDX75247 | Canola | golgi | 42.11 | 43.84 |
| Bra011349.1-P | Field mustard | golgi | 42.11 | 43.84 |
| VIT_09s0002g05930.t01 | Wine grape | endoplasmic reticulum, extracellular | 46.32 | 43.46 |
| CDX68849 | Canola | golgi | 41.58 | 43.29 |
| Solyc12g042930.1.1 | Tomato | endoplasmic reticulum, golgi | 43.16 | 43.16 |
| HORVU2Hr1G085520.2 | Barley | extracellular | 40.26 | 41.92 |
| KRH52489 | Soybean | extracellular, golgi | 40.79 | 41.89 |
| KRH52488 | Soybean | extracellular | 39.74 | 41.37 |
| KRH44408 | Soybean | golgi | 43.42 | 37.76 |
| HORVU5Hr1G109880.2 | Barley | golgi, vacuole | 35.79 | 32.61 |
| CDX80516 | Canola | plastid | 24.21 | 30.07 |
| HORVU3Hr1G072860.3 | Barley | plastid | 35.79 | 29.96 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G085370.2 | EnsemblPlantsGene:HORVU2Hr1G085370 | Gene3D:2.60.120.260 | InterPro:DUF642 | InterPro:Galactose-bd-like_sf | InterPro:IPR008979 |
| PANTHER:PTHR31265 | PANTHER:PTHR31265:SF11 | PFAM:PF04862 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF49785 |
| UniParc:UPI000B46A6A7 | UniProt:A0A287IRE2 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:617555544..617560090
Molecular Weight (calculated)
36157.5 Da
IEP (calculated)
4.475
GRAVY (calculated)
-0.066
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVIKGALLF LVVCAAARAA SAGDGPLPNG HFEDTPDRSQ MDGSVVTGEN AIPQWKTTGH VEYIESGQKE GDMILTVPEG SHAVRLGEDG SIHQQLYVTP
101: GAQYSVTFSA ARTCAQYEKL TVSVVPGDAS DEISIQTVYT SSGWDSYCWA FLATDGVMTL TIHNPVHEDD PACGPMIDSV AIKTLYPPQA TGDNLLRNGD
201: FEQGPYIAPG SPFGVLVPQR DETHISPISG WMIMSYTKVV KYVDSPHYAV PQGSYAVELV AGGEAALVQE VDTVPGSACR LEFSVGDXXX XXXXXXXXXX
301: XXXXXXXXXX XXXXXXXXXX XXXXXXXLLE FTASESRTKV VLSGSSYHTK SDSSGTRCGP VVDDASLVCV PPAPARRLLR
101: GAQYSVTFSA ARTCAQYEKL TVSVVPGDAS DEISIQTVYT SSGWDSYCWA FLATDGVMTL TIHNPVHEDD PACGPMIDSV AIKTLYPPQA TGDNLLRNGD
201: FEQGPYIAPG SPFGVLVPQR DETHISPISG WMIMSYTKVV KYVDSPHYAV PQGSYAVELV AGGEAALVQE VDTVPGSACR LEFSVGDXXX XXXXXXXXXX
301: XXXXXXXXXX XXXXXXXXXX XXXXXXXLLE FTASESRTKV VLSGSSYHTK SDSSGTRCGP VVDDASLVCV PPAPARRLLR
001: MMYQEAALLL ALLFISSNVV LSAPVRDGLL PNGNFELGPK PSQMKGSVVK ERTAVPNWNI IGFVEFIKSG QKQDDMVLVV PQGSSAVRLG NEASISQKIS
101: VLPGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPEIE IRFHNPGVEE HPACGPLIDA VAIKALFPPR FSGYNLIKNG
201: NFEEGPYVFP TAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFAV PEGHRAIELV GGKESAISQI VRTSLNKFYA LTFNVGDARD GCEGPMIVEA
301: FAGQGKVMVD YASKGKGGFR RGRLVFKAVS ARTRVTFLST FYHMKSDHSG SLCGPVIDDV RLVAVGKLRG
101: VLPGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPEIE IRFHNPGVEE HPACGPLIDA VAIKALFPPR FSGYNLIKNG
201: NFEEGPYVFP TAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFAV PEGHRAIELV GGKESAISQI VRTSLNKFYA LTFNVGDARD GCEGPMIVEA
301: FAGQGKVMVD YASKGKGGFR RGRLVFKAVS ARTRVTFLST FYHMKSDHSG SLCGPVIDDV RLVAVGKLRG
Arabidopsis Description
At1g80240 [Source:UniProtKB/TrEMBL;Acc:Q9SSB7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.