Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G369700.1 | Wheat | endoplasmic reticulum, golgi | 91.01 | 90.77 |
| TraesCS2D01G349700.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 90.74 | 90.5 |
| TraesCS2A01G351500.1 | Wheat | extracellular, golgi | 90.48 | 90.24 |
| Os04t0494900-01 | Rice | extracellular | 71.69 | 71.88 |
| Zm00001d003186_P001 | Maize | extracellular | 70.11 | 69.92 |
| EES11052 | Sorghum | mitochondrion | 69.58 | 69.39 |
| KXG26630 | Sorghum | extracellular | 67.72 | 67.37 |
| GSMUA_Achr1P14570_001 | Banana | extracellular | 57.94 | 59.51 |
| HORVU2Hr1G085440.1 | Barley | extracellular | 59.26 | 59.26 |
| GSMUA_Achr2P08300_001 | Banana | extracellular | 56.61 | 57.99 |
| HORVU5Hr1G094750.2 | Barley | extracellular | 58.2 | 56.99 |
| Bra023324.1-P | Field mustard | cytoskeleton, cytosol, peroxisome | 50.0 | 55.59 |
| HORVU6Hr1G037000.1 | Barley | extracellular | 54.76 | 55.35 |
| HORVU2Hr1G085370.2 | Barley | endoplasmic reticulum | 55.29 | 55.0 |
| VIT_04s0008g05010.t01 | Wine grape | extracellular, golgi | 52.65 | 54.08 |
| AT5G11420.1 | Thale cress | extracellular, golgi, vacuole | 51.59 | 53.28 |
| CDY54909 | Canola | cytoskeleton, cytosol, peroxisome | 47.62 | 53.1 |
| CDX85713 | Canola | extracellular | 51.32 | 53.01 |
| PGSC0003DMT400074806 | Potato | extracellular | 51.85 | 52.83 |
| CDX91217 | Canola | extracellular | 51.06 | 52.73 |
| Solyc03g120040.2.1 | Tomato | extracellular, nucleus | 35.98 | 52.71 |
| Solyc08g067030.2.1 | Tomato | extracellular | 51.59 | 52.56 |
| Solyc06g067910.2.1 | Tomato | nucleus | 51.59 | 52.42 |
| AT4G32460.1 | Thale cress | endoplasmic reticulum, golgi | 50.53 | 52.33 |
| PGSC0003DMT400073388 | Potato | mitochondrion | 51.32 | 52.29 |
| CDX97108 | Canola | golgi | 50.53 | 52.19 |
| PGSC0003DMT400014547 | Potato | extracellular | 50.79 | 52.17 |
| KRH05109 | Soybean | nucleus | 50.26 | 51.91 |
| KRH16010 | Soybean | nucleus | 50.26 | 51.91 |
| CDX68849 | Canola | golgi | 50.0 | 51.78 |
| Bra009841.1-P | Field mustard | extracellular | 50.26 | 51.77 |
| CDX80511 | Canola | extracellular | 50.26 | 51.77 |
| CDX88180 | Canola | extracellular | 50.26 | 51.77 |
| Bra011349.1-P | Field mustard | golgi | 49.74 | 51.51 |
| CDX75247 | Canola | golgi | 49.74 | 51.51 |
| CDY19801 | Canola | extracellular | 50.26 | 51.35 |
| Bra020500.1-P | Field mustard | extracellular | 49.47 | 51.09 |
| CDY05493 | Canola | extracellular | 49.47 | 51.09 |
| PGSC0003DMT400073682 | Potato | cytosol | 45.24 | 51.04 |
| AT5G25460.1 | Thale cress | endoplasmic reticulum, extracellular | 49.74 | 50.95 |
| KRH09784 | Soybean | nucleus | 50.26 | 50.8 |
| KRH23537 | Soybean | nucleus | 50.0 | 50.53 |
| VIT_09s0002g05930.t01 | Wine grape | endoplasmic reticulum, extracellular | 53.97 | 50.37 |
| KRH52489 | Soybean | extracellular, golgi | 49.21 | 50.27 |
| Solyc12g042930.1.1 | Tomato | endoplasmic reticulum, golgi | 50.0 | 49.74 |
| KRH52488 | Soybean | extracellular | 47.35 | 49.04 |
| HORVU2Hr1G085340.2 | Barley | mitochondrion, plastid | 57.67 | 43.6 |
| KRH44408 | Soybean | golgi | 48.68 | 42.11 |
| Os03t0328501-00 | Rice | plastid | 30.95 | 37.62 |
| HORVU5Hr1G109880.2 | Barley | golgi, vacuole | 41.27 | 37.41 |
| CDX80516 | Canola | plastid | 30.16 | 37.25 |
| HORVU2Hr1G085520.2 | Barley | extracellular | 34.92 | 36.16 |
| HORVU3Hr1G072860.3 | Barley | plastid | 38.62 | 32.16 |
| Os04t0494800-01 | Rice | extracellular | 28.31 | 28.23 |
| Os07t0132600-00 | Rice | mitochondrion, nucleus, plastid | 21.16 | 21.92 |
Protein Annotations
| EMBL:AK365751 | EnsemblPlants:HORVU2Hr1G085430.1 | EnsemblPlantsGene:HORVU2Hr1G085430 | Gene3D:2.60.120.260 | InterPro:DUF642 | InterPro:Galactose-bd-like_sf |
| InterPro:IPR008979 | PANTHER:PTHR31265 | PANTHER:PTHR31265:SF8 | PFAM:PF04862 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF49785 | TMHMM:TMhelix | UniParc:UPI0002006AA7 | UniProt:F2DPD3 | MapMan:35.2 | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DPD3]
Coordinates
chrchr2H:+:617710981..617712895
Molecular Weight (calculated)
40541.0 Da
IEP (calculated)
4.621
GRAVY (calculated)
-0.103
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRGREMVQG PRCVALLLLV CMAALVASDT TDGILPNGNF EEAPDRSQMD GTRVTGRYAI PRWEVCGCVE YICSGQKQGD MVLPVPEGAY AMRLGNDASV
101: QQQLSVTPGT HYSITFSAAR TCAQAERLNV TVAAESGQLP IQTVYTSSGW DSYSWAFEAK DNVVLLTVHN PGYDEDATCG PLVDSFAIKT LLPPQSNDYN
201: MLKNGDFEEG PYICPGTSCG VMVPAMGEDR YSPLSPWTIM SSTKSVRYVD SAHYAVPQGA RAVQLVFGAE SALVQEVGTM PGLSYKMEFS VGDAADGCTG
301: SLAVEAYAAN GRVKVPYESQ GTGGHTRGVL EFTATEDRTR VVFVSASYNM KPDGTVCGPV VDDASLVCVQ SHARRLLL
101: QQQLSVTPGT HYSITFSAAR TCAQAERLNV TVAAESGQLP IQTVYTSSGW DSYSWAFEAK DNVVLLTVHN PGYDEDATCG PLVDSFAIKT LLPPQSNDYN
201: MLKNGDFEEG PYICPGTSCG VMVPAMGEDR YSPLSPWTIM SSTKSVRYVD SAHYAVPQGA RAVQLVFGAE SALVQEVGTM PGLSYKMEFS VGDAADGCTG
301: SLAVEAYAAN GRVKVPYESQ GTGGHTRGVL EFTATEDRTR VVFVSASYNM KPDGTVCGPV VDDASLVCVQ SHARRLLL
001: MMYQEAALLL ALLFISSNVV LSAPVRDGLL PNGNFELGPK PSQMKGSVVK ERTAVPNWNI IGFVEFIKSG QKQDDMVLVV PQGSSAVRLG NEASISQKIS
101: VLPGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPEIE IRFHNPGVEE HPACGPLIDA VAIKALFPPR FSGYNLIKNG
201: NFEEGPYVFP TAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFAV PEGHRAIELV GGKESAISQI VRTSLNKFYA LTFNVGDARD GCEGPMIVEA
301: FAGQGKVMVD YASKGKGGFR RGRLVFKAVS ARTRVTFLST FYHMKSDHSG SLCGPVIDDV RLVAVGKLRG
101: VLPGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPEIE IRFHNPGVEE HPACGPLIDA VAIKALFPPR FSGYNLIKNG
201: NFEEGPYVFP TAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFAV PEGHRAIELV GGKESAISQI VRTSLNKFYA LTFNVGDARD GCEGPMIVEA
301: FAGQGKVMVD YASKGKGGFR RGRLVFKAVS ARTRVTFLST FYHMKSDHSG SLCGPVIDDV RLVAVGKLRG
Arabidopsis Description
At1g80240 [Source:UniProtKB/TrEMBL;Acc:Q9SSB7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.